Gene omics information

Query gene ID At1g20760
Gene name calcium-binding EF hand family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At1g20760838666calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:plasma membrane;MBOFPVAS.X.H.G.
0.8391.4At1g17450838317-F:molecular_function unknown;P:unknown;C:unknown;POBS.X.H.G.
0.7788.0At4g31930829323mitochondrial glycoprotein family protein / MAM33 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOS.X.H.G.
0.7184.2At5g65490836674-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAS.X.H.G.
0.6781.6At1g55170841960unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.6781.6At1g67890843117protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOBFVAS.X.H.G.
0.5974.7At5g65450836670UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17)Encodes a ubiquitin-specific protease.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
477.6100.0GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.799.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.299.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.299.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.099.2GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.499.1GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.299.1GSM142646MC002_ATH1_A8.3-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.499.0GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.499.0GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.499.0GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.067e-654At1g21630838765calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVAC.G.S.X.
0.011e-140At3g03380821268DegP7 (DegP protease 7)Encodes a putative DegP protease.C.G.S.X.
0.014e-138At5g50920835165CLPC1Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.C.G.S.X.
0.014e-138At1g65320842840CBS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;PC.G.S.X.
0.012e+036At5g607608361972-phosphoglycerate kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFVC.G.S.X.
0.012e+036At3g18270821355CYP77A5Pa cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model.C.G.S.X.
0.012e+036At2g22850816816AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFC.G.S.X.
0.012e+036At2g42880818888ATMPK20member of MAP KinaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.111e-35153Glycine maxGmaAffx.48654.1.S1_atAW666286--2e-36At1g20760calcium-binding EF hand family proteinC.G.S.X.
0.017e-136Hordeum vulgareContig6376_atContig6376--1e-10At5g09900EMB2107 (EMBRYO DEFECTIVE 2107)C.G.S.X.
0.062e-1069Oryza sativaOs03g0130500AK058465.1-Calcium-binding EF-hand domain containing protein1e-10At1g20760calcium-binding EF hand family proteinC.G.S.X.
0.091e-1483Populus trichocarpaPtpAffx.205299.1.S1_atpmrna10512hypothetical protein-4e-19At1g21630calcium-binding EF hand family proteinC.G.S.X.
0.043e-1481Triticum aestivumTa.2282.1.S1_a_atCA602264--2e-14At1g20760calcium-binding EF hand family proteinC.G.S.X.
0.012e+034Vitis vinifera1622886_atCB348288hypothetical protein LOC100252460-3e-13At1g52540protein kinase, putativeC.G.S.X.
0.013e+034Zea maysZm.5056.1.A1_atCA400979--6e+0At5g08400unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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