CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g20650

Gene name ATP binding / protein kinase/ protein serine/threonine kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g20650 838654 ATP binding / protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.29 30.3 At2g24270 816962 ALDH11A3 Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity. S.X. H.G.
0.29 30.3 At3g13040 820490 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFBA S.X. H.G.
0.15 7.8 At3g07310 819919 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO S.X. H.G.
0.11 4.1 At4g15560 827230 CLA1 (CLOROPLASTOS ALTERADOS 1) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis S.X. H.G.
0.10 3.4 At3g56140 824780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFV S.X. H.G.
0.04 0.9 At4g25910 828697 NFU3 Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
65.7 99.8 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.1 99.6 E-ATMX-6-raw-cel-1308219121
24.1 99.6 E-ATMX-35-raw-cel-1574334896
23.4 99.6 E-ATMX-35-raw-cel-1574334928
19.8 99.6 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
19.1 99.6 E-MEXP-148-raw-cel-350529179
18.6 99.5 GSM237293 Shoot control rep2 GSE9311 Gene expression in roots and shoots of plants grown on selenate
18.1 99.5 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
17.6 99.5 GSM253198 RGA-GR-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
17.1 99.5 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 2e-102 373 At1g76370 843969 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast envelope;MPOBFVA C.G. S.X.
0.09 1e-7 57 At2g28590 817407 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.04 1e-7 57 At1g49270 841351 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOBPFVA C.G. S.X.
0.04 1e-5 52 At5g18610 831979 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.09 1e-5 52 At1g61860 842483 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.04 4e-5 50 At1g48480 841269 RKL1 Arabidopsis thaliana receptor-like protein kinase (RKL1) gene C.G. S.X.
0.07 2e-4 48 At5g02800 831285 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.03 2e-4 48 At5g13160 831155 PBS1 (avrPphB susceptible 1) Mutant is defective in perception of Pseudomonas syringae avirulence gene avrPphB. Encodes a putative serine-threonine kinase. C.G. S.X.
0.03 2e-4 48 At3g26940 822312 CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1) Receptor-like cytoplasmic kinase, RLCKVII subfamily C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 8e-4 46 Glycine max Gma.13656.2.S1_a_at BE802684 - - 1e-3 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
0.06 7e-5 48 Hordeum vulgare Contig11724_at Contig11724 - - 8e-11 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
0.11 2e-5 52 Oryza sativa Os02g0513000 AK120921.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 2e-29 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
0.44 2e-16 87 Populus trichocarpa PtpAffx.201545.1.S1_at pmrna3040 hypothetical protein - 1e-16 At1g20650 ATP binding / protein kinase/ protein serine/threonine kinase C.G. S.X.
0.06 6e-4 46 Triticum aestivum Ta.7443.1.S1_at CK153462 Protein serine/threonine kinase-like - 9e-26 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
0.08 2e-1 36 Vitis vinifera 1619555_at AY395743.1 hypothetical protein LOC100250154 - 3e-61 At5g02800 protein kinase family protein C.G. S.X.
0.07 1e-9 63 Zea mays ZmAffx.914.1.A1_at AI770970 - - 2e-20 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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