Gene omics information

Query gene ID At1g20640
Gene name RWP-RK domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g20640838653RWP-RK domain-containing proteinF:transcription factor activity;P:nodulation;C:unknown;POMS.X.H.G.
0.4963.5At5g19420832062Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOPBFAVS.X.H.G.
0.4558.3At3g03810821131EDA30 (embryo sac development arrest 30)F:molecular_function unknown;P:N-terminal protein myristoylation, polar nucleus fusion, pollen tube development;C:chloroplast;PS.X.H.G.
0.3846.7At5g64390836560HEN4 (HUA ENHANCER 4)encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl.S.X.H.G.
0.3745.0At1g24190839032SNL3 (SIN3-LIKE 3)Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.S.X.H.G.
0.3541.6At3g58050824974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.3439.8At1g11060837647unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOFS.X.H.G.
0.3338.1At1g13940837954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBS.X.H.G.
0.3338.1At3g53090824475UPL7encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.S.X.H.G.
0.3235.7At1g22020838807SHM6 (serine hydroxymethyltransferase 6)Encodes a putative serine hydroxymethyltransferase.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
167.8100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
149.799.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
52.399.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
41.999.8GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
39.099.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.699.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
31.999.7GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.599.7GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.399.7GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
28.399.7GSM184523Stele root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.560739At1g76350843967RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POBMC.G.S.X.
0.032e-1481At4g35270829680RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POMFBVC.G.S.X.
0.046e-1273At2g17150816220RWP-RK domain-containing proteinF:transcription factor activity;P:unknown;C:unknown;POFMC.G.S.X.
0.012e-552At4g38340829991RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POFBC.G.S.X.
0.028e-240At5g58782835993dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPC.G.S.X.
0.013e-138At4g12450826857unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOC.G.S.X.
0.013e-138At1g75550843891glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-140Glycine maxGma.11555.1.S1_atAW306578--3e+0At5g67190AP2 domain-containing transcription factor, putativeC.G.S.X.
0.016e-136Hordeum vulgareContig20013_atContig20013--2e-2At4g17440unknown proteinC.G.S.X.
0.024e-552Oryza sativaOs11g0264300AK064859.1-Plant regulator RWP-RK domain containing protein1e-19At3g59580RWP-RK domain-containing proteinC.G.S.X.
0.128e-963Populus trichocarpaPtpAffx.201548.1.S1_atpmrna3043hypothetical protein-2e-11At1g76350RWP-RK domain-containing proteinC.G.S.X.
0.042e-552Triticum aestivumTaAffx.38630.1.S1_atBJ224281--1e+0At1g60830U2 snRNP auxiliary factor large subunit, putativeC.G.S.X.
0.014e-136Vitis vinifera1614931_atCF605861hypothetical protein LOC100241227-3e-1At5g04470SIM (SIAMESE)C.G.S.X.
0.026e-756Zea maysZm.3900.2.A1_atBM267197hypothetical protein LOC100191188-1e-17At3g59580RWP-RK domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009877The formation of nitrogen-fixing root nodules on plant roots.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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