CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g20640

Gene name RWP-RK domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g20640 838653 RWP-RK domain-containing protein F:transcription factor activity;P:nodulation;C:unknown;POM S.X. H.G.
0.49 63.5 At5g19420 832062 Ran GTPase binding / chromatin binding / zinc ion binding F:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOPBFAV S.X. H.G.
0.45 58.3 At3g03810 821131 EDA30 (embryo sac development arrest 30) F:molecular_function unknown;P:N-terminal protein myristoylation, polar nucleus fusion, pollen tube development;C:chloroplast;P S.X. H.G.
0.38 46.7 At5g64390 836560 HEN4 (HUA ENHANCER 4) encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl. S.X. H.G.
0.37 45.0 At1g24190 839032 SNL3 (SIN3-LIKE 3) Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19. S.X. H.G.
0.35 41.6 At3g58050 824974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.34 39.8 At1g11060 837647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF S.X. H.G.
0.33 38.1 At1g13940 837954 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB S.X. H.G.
0.33 38.1 At3g53090 824475 UPL7 encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. S.X. H.G.
0.32 35.7 At1g22020 838807 SHM6 (serine hydroxymethyltransferase 6) Encodes a putative serine hydroxymethyltransferase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
167.8 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
149.7 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.3 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
41.9 99.8 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.0 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.6 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.9 99.7 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.5 99.7 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.3 99.7 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
28.3 99.7 GSM184523 Stele root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 0 739 At1g76350 843967 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POBM C.G. S.X.
0.03 2e-14 81 At4g35270 829680 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POMFBV C.G. S.X.
0.04 6e-12 73 At2g17150 816220 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:unknown;POFM C.G. S.X.
0.01 2e-5 52 At4g38340 829991 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POFB C.G. S.X.
0.02 8e-2 40 At5g58782 835993 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP C.G. S.X.
0.01 3e-1 38 At4g12450 826857 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO C.G. S.X.
0.01 3e-1 38 At1g75550 843891 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 40 Glycine max Gma.11555.1.S1_at AW306578 - - 3e+0 At5g67190 AP2 domain-containing transcription factor, putative C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig20013_at Contig20013 - - 2e-2 At4g17440 unknown protein C.G. S.X.
0.02 4e-5 52 Oryza sativa Os11g0264300 AK064859.1 - Plant regulator RWP-RK domain containing protein 1e-19 At3g59580 RWP-RK domain-containing protein C.G. S.X.
0.12 8e-9 63 Populus trichocarpa PtpAffx.201548.1.S1_at pmrna3043 hypothetical protein - 2e-11 At1g76350 RWP-RK domain-containing protein C.G. S.X.
0.04 2e-5 52 Triticum aestivum TaAffx.38630.1.S1_at BJ224281 - - 1e+0 At1g60830 U2 snRNP auxiliary factor large subunit, putative C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1614931_at CF605861 hypothetical protein LOC100241227 - 3e-1 At5g04470 SIM (SIAMESE) C.G. S.X.
0.02 6e-7 56 Zea mays Zm.3900.2.A1_at BM267197 hypothetical protein LOC100191188 - 1e-17 At3g59580 RWP-RK domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009877 The formation of nitrogen-fixing root nodules on plant roots.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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