Gene omics information

Query gene ID At1g20440
Gene name COR47 (COLD-REGULATED 47)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At1g20440838632COR47 (COLD-REGULATED 47)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.S.X.H.G.
1.00100.0At1g20450838633ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.S.X.H.G.
0.8089.8At2g17840816293ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7)Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.S.X.H.G.
0.6781.6At2g23120816844-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PS.X.H.G.
0.5773.8At1g01470837071LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
31.999.7GSM226548Slice6JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
29.799.7GSM226550Slice8JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
25.599.7GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
23.699.6GSM184914Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
22.399.6E-MEXP-1112-raw-cel-1590665429
20.799.6GSM226539L9SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
20.499.6E-MEXP-1112-raw-cel-1590665845
19.399.6GSM184917Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
19.199.6GSM131282AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
19.099.5GSM269819C2 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.414e-32139At1g20450838633ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.C.G.S.X.
0.294e-1065At1g76180843950ERD14 (EARLY RESPONSE TO DEHYDRATION 14)Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.C.G.S.X.
0.053e-550At4g38410829998dehydrin, putativeF:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBAC.G.S.X.
0.056e-342At5g66400836772RAB18 (RESPONSIVE TO ABA 18)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.C.G.S.X.
0.046e-342At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMC.G.S.X.
0.023e-240At4g02940828132oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.073e-240At2g21490816688LEA (DEHYDRIN LEA)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-757Glycine maxGma.10850.2.S1_atCF920623--2e-7At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
0.095e-548Hordeum vulgareContig1725_s_atContig1725--8e-5At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
0.052e-448Oryza sativaOs11g0453900AK109096.1-Dehydrin RAB 16D3e-2At2g21490LEA (DEHYDRIN LEA)C.G.S.X.
0.066e-446Populus trichocarpaPtp.3246.1.S1_x_atBU810335hypothetical protein-6e-4At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
0.081e-448Triticum aestivumTa.2704.1.S1_x_atX59133.1rab protein-1e-4At3g50980XERO1 (DEHYDRIN XERO 1)C.G.S.X.
0.093e-548Vitis vinifera1622639_atCA810871hypothetical protein LOC100254126-1e-4At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
0.044e-238Zea maysZm.14392.1.S1_atAY104757.1dehydrin1-6e-7At3g50980XERO1 (DEHYDRIN XERO 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0006970A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
XGO:0009631Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures.
XGO:0010286Any process that increases heat tolerance of an organism in response to high temperatures.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
CGO:0006950A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
CGO:0009415A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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