CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g20350

Gene name ATTIM17-1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase S.X. H.G.
0.60 75.7 At2g04050 814939 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA S.X. H.G.
0.55 70.6 At2g04070 814943 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMA S.X. H.G.
0.53 68.6 At3g48850 824046 mitochondrial phosphate transporter, putative F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO S.X. H.G.
0.50 65.3 At1g32350 840127 AOX1D (alternative oxidase 1D) F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM S.X. H.G.
0.46 59.8 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. S.X. H.G.
0.41 52.4 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. S.X. H.G.
0.40 50.8 At2g20720 816600 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
405.9 100.0 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
392.5 100.0 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
226.7 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
199.1 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
137.6 99.9 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
105.1 99.9 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
100.3 99.9 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
94.9 99.9 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
94.8 99.9 E-MEXP-739-raw-cel-1099467384
88.5 99.9 GSM133951 Murray_2-7_T12-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 5e-3 42 At2g37410 818317 ATTIM17-2 Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway. C.G. S.X.
0.04 2e-2 40 At5g11690 831041 ATTIM17-3 mitochondrial inner membrane translocase C.G. S.X.
0.02 8e-2 38 At2g46850 819298 ATP binding / protein kinase/ protein tyrosine kinase F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOFBV C.G. S.X.
0.02 3e-1 36 At5g06839 830575 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF C.G. S.X.
0.01 3e-1 36 At4g33500 829488 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.03 3e-1 36 At3g12490 820428 cysteine protease inhibitor, putative / cystatin, putative Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress). C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-4 46 Glycine max GmaAffx.9037.1.S1_at BE822770 - - 5e-1 At2g37410 ATTIM17-2 C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig21627_at Contig21627 - - 1e+0 At1g08180 unknown protein C.G. S.X.
0.03 6e-1 36 Oryza sativa Os07g0590800 AK062359.1 - Hypothetical protein 1e+0 At5g61490 - C.G. S.X.
0.05 3e-2 40 Populus trichocarpa Ptp.2215.1.S1_s_at CV282451 - - 5e-7 At2g37410 ATTIM17-2 C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.7432.3.S1_at CA699646 - - 7e-2 At5g40080 60S ribosomal protein-related C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1621567_at BQ793310 hypothetical protein LOC100259466 - 1e-4 At2g37410 ATTIM17-2 C.G. S.X.
0.09 6e-1 34 Zea mays Zm.13937.1.S1_at AY108141.1 mitochondrial import inner membrane translocase subunit Tim17 - 6e-1 At2g37410 ATTIM17-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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