CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g20310

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g20310 838619 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.68 82.2 At1g06620 837171 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase S.X. H.G.
0.64 78.9 At1g35210 840410 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.61 76.7 At2g20142 2745551 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.61 76.7 At5g47220 834768 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation. S.X. H.G.
0.58 73.8 At5g61900 836311 BON1 (BONZAI 1) Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response. S.X. H.G.
0.54 69.5 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV S.X. H.G.
0.54 69.5 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.54 69.5 At1g22810 838887 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
0.54 69.5 At1g30135 839893 JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
436.2 100.0 E-MEXP-807-raw-cel-1173273116
356.6 100.0 E-MEXP-807-raw-cel-1173273060
310.7 100.0 E-MEXP-807-raw-cel-1173273170
302.9 100.0 E-MEXP-807-raw-cel-1173273088
215.1 100.0 E-MEXP-807-raw-cel-1173273196
203.2 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
167.8 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
159.8 99.9 E-MEXP-807-raw-cel-1173273223
104.2 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
104.1 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 4e-16 85 At1g76070 843939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF C.G. S.X.
0.02 9e-2 38 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB C.G. S.X.
0.03 9e-2 38 At2g03410 814870 Mo25 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 4e-1 36 At5g21160 832242 La domain-containing protein / proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MFPBOVA C.G. S.X.
0.03 4e-1 36 At5g09920 830853 NRPB4 Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4) C.G. S.X.
0.01 4e-1 36 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. C.G. S.X.
0.02 4e-1 36 At3g52820 824448 PAP22 (PURPLE ACID PHOSPHATASE 22) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA C.G. S.X.
0.03 4e-1 36 At2g36220 818194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e+0 34 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-3 42 Glycine max Gma.1470.1.S1_at AB083026.1 syringolide-induced protein 14-1-1 - 1e-2 At1g20310 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEg0017L02r2_at HVSMEg0017L02r2 - - 4e+0 At4g17670 senescence-associated protein-related C.G. S.X.
0.03 7e-1 36 Oryza sativa Os02g0779300 AK062611.1 - Conserved hypothetical protein 4e-1 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.04 8e-6 52 Populus trichocarpa PtpAffx.201584.1.S1_at pmrna3111 hypothetical protein - 2e-9 At1g76070 unknown protein C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.111156.1.S1_at CA647075 - - 1e+0 At1g20310 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1622574_at CF568861 hypothetical protein LOC100241704 - 6e-2 At2g29050 ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.13088.1.A1_at CA404275 - - 9e-1 At3g29720 transferase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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