Gene omics information

Query gene ID At1g20220
Gene name nucleic acid binding
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6882.2At1g20220838610nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:plant-type cell wall;MBOPFVAS.X.H.G.
0.7083.5At3g03110821074XPO1BEncodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes.S.X.H.G.
0.6478.9At2g03270814856DNA-binding protein, putativeF:nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding;P:unknown;C:cellular_component unknown;BMOFPAVS.X.H.G.
0.6378.1At5g49220834982unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.6277.3At3g12530820432PSF2F:molecular_function unknown;P:DNA replication;C:nucleus;MFOPS.X.H.G.
0.6075.7At1g05120839319SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 6 functions;P:unknown;C:unknown;MFBOPVAS.X.H.G.
0.6075.7At1g47570841166zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVS.X.H.G.
0.6075.7At5g65000836624nucleotide-sugar transporter family proteinF:nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:integral to membrane, Golgi membrane;MPOFABS.X.H.G.
0.5773.8At1g71350843476eukaryotic translation initiation factor SUI1 family proteinF:RNA binding, translation initiation factor activity;P:translational initiation;C:unknown;MFOPAS.X.H.G.
0.5773.8At5g55300835623TOP1ALPHA (DNA TOPOISOMERASE I ALPHA)Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
44.599.8GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.199.4GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
11.399.3GSM173623Col-0 rep2GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
10.799.2GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.699.2GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
10.599.2GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
10.499.2GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.494e-91335At1g76010843932nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAC.G.S.X.
0.042e-654At5g33390833329glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BMOPFVAC.G.S.X.
0.038e-342At5g38110833791ASF1B (ANTI- SILENCING FUNCTION 1B)This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.C.G.S.X.
0.041e-138At5g37720833750RNA and export factor-binding protein, putativeF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MFPOBVC.G.S.X.
0.031e-138At3g55790824745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFVC.G.S.X.
0.015e-136At5g50420835110unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.035e-136At4g39260830082GR-RBP8Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.051e-242Glycine maxGma.10981.1.S1_atBM092081--1e-2At5g33390glycine-rich proteinC.G.S.X.
0.084e-961Hordeum vulgareContig7049_s_atContig7049--4e-8At1g76010nucleic acid bindingC.G.S.X.
0.096e-550Oryza sativaOs03g0695600AB026566.1-Proteasome subunit beta type 2 (EC (20Sproteasome alpha subunit D) (20S proteasome subunitbeta-4)3e-3At3g22630PBD1 (20S PROTEASOME BETA SUBUNIT D1)C.G.S.X.
0.133e-1583Populus trichocarpaPtpAffx.201790.1.S1_atpmrna3567hypothetical protein-4e-16At1g76010nucleic acid bindingC.G.S.X.
0.094e-1169Triticum aestivumTa.3487.1.S1_a_atAL825994--5e-11At1g20220nucleic acid bindingC.G.S.X.
0.136e-444Vitis vinifera1620195_atCB347615hypothetical protein LOC100254082-4e-33At1g76010nucleic acid bindingC.G.S.X.
0.035e-238Zea maysZm.4357.3.S1_atAY104397.1hypothetical protein LOC100191858 /// splicing factor U2af 38 kDa subunit-3e-22At1g27650ATU2AF35AC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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