CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g20190

Gene name ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At1g20190 838608 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.30 32.1 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.30 32.1 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB S.X. H.G.
0.24 20.7 At4g25260 828629 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P S.X. H.G.
0.21 15.8 At1g06980 837208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.20 14.4 At1g25230 839105 purple acid phosphatase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPF S.X. H.G.
0.15 7.8 At2g42900 818891 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.13 5.8 At3g12710 820453 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAM S.X. H.G.
0.13 5.8 At2g40610 818656 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
147.9 99.9 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
138.1 99.9 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
62.2 99.8 Millenaar_A2_ETH_Rep1_ATH1
51.9 99.8 Millenaar_A2_ETH_Rep2_ATH1
46.9 99.8 GSM226269 WT(Ler)_Dark_replicate3 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
44.5 99.8 GSM131177 AtGen_D-9_1-DS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
43.8 99.8 Millenaar_A5_ETH_Rep3_ATH1
43.0 99.8 GSM292077 Wt, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
39.5 99.8 GSM134516 Col-0_4day_dark_+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
35.5 99.7 GSM292078 Wt, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 3e-14 79 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.12 3e-14 79 At2g03090 814838 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.08 4e-7 56 At2g28950 817444 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.10 3e-5 50 At5g56320 835731 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.09 2e-3 44 At2g39700 818553 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.06 6e-3 42 At1g69530 843288 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 4e-17 89 Glycine max Gma.9826.1.S1_at AF516879.1 expansin - 5e-17 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) C.G. S.X.
0.07 8e-7 54 Hordeum vulgare Contig3676_at Contig3676 - - 9e-6 At2g37640 EXP3 C.G. S.X.
0.16 8e-7 56 Oryza sativa Os03g0155300 AY046929.1 - Expansin/Lol pI family protein 6e-7 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) C.G. S.X.
0.15 4e-5 50 Populus trichocarpa PtpAffx.27616.1.S1_at DN491669 hypothetical protein - 4e-5 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) C.G. S.X.
0.08 6e-3 42 Triticum aestivum Ta.30669.1.S1_at AY543534.1 expansin EXPA8 - 1e-5 At2g37640 EXP3 C.G. S.X.
0.19 1e-13 75 Vitis vinifera 1610418_at BQ798078 hypothetical protein LOC100245385 - 8e-13 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) C.G. S.X.
0.12 4e-8 57 Zea mays Zm.667.1.A1_at AF332171.1 alpha-expansin 3 - 1e-7 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009826 The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
C GO:0009828 The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.
C GO:0009831 The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage