CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g19650

Gene name SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At1g19650 838552 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFO S.X. H.G.
0.90 95.1 At3g07400 819928 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMB S.X. H.G.
0.88 94.0 At5g58760 835990 DDB2 (damaged DNA-binding 2) F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA S.X. H.G.
0.85 92.4 At3g12140 820389 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.84 91.9 At2g02090 814740 ETL1 F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVA S.X. H.G.
0.81 90.4 At4g02730 828189 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV S.X. H.G.
0.79 89.1 At5g25380 832610 CYCA2 core cell cycle genes S.X. H.G.
0.79 89.1 At3g58800 825049 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PVO S.X. H.G.
0.78 88.6 At4g39230 830078 isoflavone reductase, putative encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol. S.X. H.G.
0.76 87.4 At1g17040 838274 SHA (SH2 DOMAIN PROTEIN A) Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
359.4 100.0 E-ATMX-35-raw-cel-1574334832
348.0 100.0 E-ATMX-35-raw-cel-1574334816
194.4 100.0 E-ATMX-35-raw-cel-1574334800
75.4 99.9 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
52.1 99.8 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
43.6 99.8 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
37.2 99.7 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
36.0 99.7 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
35.7 99.7 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
33.2 99.7 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 4e-163 575 At1g75370 843873 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative F:transporter activity;P:transport;C:plasma membrane;MPFO C.G. S.X.
0.19 1e-12 75 At2g21540 816693 SFH3 (SEC14-LIKE 3) F:phosphatidylinositol transporter activity;P:flower development, transport;C:intracellular;MPFO C.G. S.X.
0.03 1e-12 75 At1g55690 842018 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:cellular_component unknown;MPFO C.G. S.X.
0.08 3e-10 67 At4g39180 830073 SEC14 encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae C.G. S.X.
0.08 6e-5 50 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 9e-14 79 Glycine max Gma.5017.1.S1_at BI472180 - - 4e-42 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.05 2e+0 34 Hordeum vulgare Contig7871_s_at Contig7871 - - 1e-9 At1g75370 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative C.G. S.X.
0.12 2e-6 56 Oryza sativa Os02g0133100 AK060180.1 - Phosphatidylinositol transfer-like protein III 1e-18 At2g21520 transporter C.G. S.X.
0.17 2e-12 75 Populus trichocarpa PtpAffx.204233.1.S1_at pmrna8323 hypothetical protein - 2e-60 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.05 6e-2 40 Triticum aestivum Ta.25723.1.S1_at CD374048 - - 1e-3 At1g75370 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative C.G. S.X.
0.13 4e-25 115 Vitis vinifera 1612054_at CF213303 hypothetical protein LOC100248963 - 3e-25 At1g19650 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.11 7e-6 52 Zea mays Zm.6096.2.S1_at AJ006545 - - 2e-26 At2g21520 transporter C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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