CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g19610

Gene name PDF1.4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At1g19610 838548 PDF1.4 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. S.X. H.G.
0.05 1.1 At4g07850 3770287 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.02 0.4 At5g60470 836168 nucleic acid binding / transcription factor/ zinc ion binding F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF S.X. H.G.
0.01 0.2 At1g72060 843537 serine-type endopeptidase inhibitor F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P S.X. H.G.
0.00 0.0 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
442.9 100.0 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
261.0 100.0 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
218.2 100.0 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
208.9 100.0 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
168.1 100.0 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
145.1 99.9 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
140.6 99.9 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
126.3 99.9 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
98.1 99.9 GSM133812 Diamond_A-1-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
97.6 99.9 E-NASC-76-raw-cel-1359878900
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 36 At4g34860 829638 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:sucrose catabolic process, using beta-fructofuranosidase;C:cytosol;OPB C.G. S.X.
0.02 1e-1 36 At3g16810 820934 APUM24 (Arabidopsis Pumilio 24) F:RNA binding, binding;P:unknown;C:nucleolus;MFPOB C.G. S.X.
0.02 1e-1 36 At3g59030 825072 TT12 (TRANSPARENT TESTA 12) Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds. C.G. S.X.
0.02 4e-1 34 At4g36270 829784 ATP binding F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MPOB C.G. S.X.
0.03 4e-1 34 At1g06850 837197 AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBV C.G. S.X.
0.03 4e-1 34 At1g61740 842471 unknown protein F:unknown;P:unknown;C:endomembrane system, integral to membrane;BOPA C.G. S.X.
0.02 4e-1 34 At1g10890 837632 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e+0 32 Glycine max HgAffx.3133.1.S1_at CK349557 - - 3e+0 At1g19610 PDF1.4 C.G. S.X.
0.06 3e+0 30 Hordeum vulgare HVSMEl0005O07f_at HVSMEl0005O07f - - 5e-1 At5g02560 HTA12 C.G. S.X.
0.06 3e+0 32 Oryza sativa OsAffx.21031.1.S1_at - - - 0 C.G. S.X.
0.14 2e-4 46 Populus trichocarpa PtpAffx.201643.1.S1_at pmrna3260 hypothetical protein - 1e-4 At1g19610 PDF1.4 C.G. S.X.
0.09 1e-1 36 Triticum aestivum TaAffx.59833.1.S1_at CA594691 - - 9e-2 At1g19610 PDF1.4 C.G. S.X.
0.06 2e+0 30 Vitis vinifera 1619045_at CB341512 - - 2e+0 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.03 7e-1 32 Zea mays Zm.17856.2.A1_at BG265848 hypothetical protein LOC100272418 - 2e-21 At3g59540 60S ribosomal protein L38 (RPL38B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage