Gene omics information

Query gene ID At1g19580
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g19580838545GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.S.X.H.G.
0.4761.2At4g25550828660protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
0.4761.2At1g43190840918polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MPOFS.X.H.G.
0.4558.3At1g13560837917AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)Encodes aminoalcoholphosphotransferase AAPT1.S.X.H.G.
0.4457.2At5g36230833620eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinF:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOVS.X.H.G.
0.4152.4At1g01910839305anion-transporting ATPase, putativeF:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOMAFPS.X.H.G.
0.4050.8At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)S.X.H.G.
0.4050.8At1g65270842834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPOS.X.H.G.
0.3846.7At2g29080817456ftsh3 (FtsH protease 3)encodes an FtsH protease that is localized to the mitochondrionS.X.H.G.
0.3745.0At3g50520824216phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
20.899.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.099.4GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
11.499.3GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
10.699.2GSM184490Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
10.399.2GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.504e-26119At1g47260841129GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.C.G.S.X.
0.345e-25115At5g66510836783GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.C.G.S.X.
0.024e-136At5g63860836506UVR8 (UVB-RESISTANCE 8)UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus.C.G.S.X.
0.024e-136At4g02730828189transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAVC.G.S.X.
0.032e+034At3g48680824029GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2)Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.C.G.S.X.
0.022e+034At1g06250837135lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMVC.G.S.X.
0.012e+034At1g65010842809unknown proteinF:unknown;P:unknown;C:chloroplast;MOBFPAVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.371e-42174Glycine maxGma.16388.1.S1_atCD403252--1e-42At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)C.G.S.X.
0.241e-42173Hordeum vulgareContig3102_atContig3102--2e-13At5g66510GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)C.G.S.X.
0.246e-2099Oryza sativaOs07g0642900AK060158.1-Trimeric LpxA-like domain containing protein5e-20At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)C.G.S.X.
0.656e-109395Populus trichocarpaPtp.2146.1.S1_atCK088192hypothetical protein-5e-109At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)C.G.S.X.
0.168e-1271Triticum aestivumTaAffx.59244.2.S1_atCA625584--5e-12At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)C.G.S.X.
0.551e-72272Vitis vinifera1608449_atCB349956hypothetical protein LOC100247109-6e-72At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)C.G.S.X.
0.264e-24111Zea maysZm.15626.1.S1_atCA404507--1e-8At5g66510GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
SGO:0009853A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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