CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g19580

Gene name GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g19580 838545 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. S.X. H.G.
0.47 61.2 At4g25550 828660 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.47 61.2 At1g43190 840918 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MPOF S.X. H.G.
0.45 58.3 At1g13560 837917 AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) Encodes aminoalcoholphosphotransferase AAPT1. S.X. H.G.
0.44 57.2 At5g36230 833620 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein F:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOV S.X. H.G.
0.41 52.4 At1g01910 839305 anion-transporting ATPase, putative F:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOMAFP S.X. H.G.
0.40 50.8 At1g13320 837892 PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) S.X. H.G.
0.40 50.8 At1g65270 842834 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPO S.X. H.G.
0.38 46.7 At2g29080 817456 ftsh3 (FtsH protease 3) encodes an FtsH protease that is localized to the mitochondrion S.X. H.G.
0.37 45.0 At3g50520 824216 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.9 99.5 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.0 99.4 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.4 99.3 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.8 99.2 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.6 99.2 GSM184490 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.6 99.2 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4 99.2 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.3 99.2 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.2 99.2 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 4e-26 119 At1g47260 841129 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. C.G. S.X.
0.34 5e-25 115 At5g66510 836783 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. C.G. S.X.
0.02 4e-1 36 At5g63860 836506 UVR8 (UVB-RESISTANCE 8) UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus. C.G. S.X.
0.02 4e-1 36 At4g02730 828189 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV C.G. S.X.
0.03 2e+0 34 At3g48680 824029 GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2) Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex. C.G. S.X.
0.02 2e+0 34 At1g06250 837135 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMV C.G. S.X.
0.01 2e+0 34 At1g65010 842809 unknown protein F:unknown;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 1e-42 174 Glycine max Gma.16388.1.S1_at CD403252 - - 1e-42 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.24 1e-42 173 Hordeum vulgare Contig3102_at Contig3102 - - 2e-13 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
0.24 6e-20 99 Oryza sativa Os07g0642900 AK060158.1 - Trimeric LpxA-like domain containing protein 5e-20 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.65 6e-109 395 Populus trichocarpa Ptp.2146.1.S1_at CK088192 hypothetical protein - 5e-109 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.16 8e-12 71 Triticum aestivum TaAffx.59244.2.S1_at CA625584 - - 5e-12 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.55 1e-72 272 Vitis vinifera 1608449_at CB349956 hypothetical protein LOC100247109 - 6e-72 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.26 4e-24 111 Zea mays Zm.15626.1.S1_at CA404507 - - 1e-8 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009853 A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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