CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g19270

Gene name DA1 (DA 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.62 77.3 At1g19270 838510 DA1 (DA 1) F:ubiquitin binding;P:seed morphogenesis, ovule morphogenesis, negative regulation of organ growth;C:unknown;MOPFB S.X. H.G.
0.53 68.6 At3g21630 821717 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. S.X. H.G.
0.46 59.8 At3g28450 822474 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast, plasma membrane, membrane;PMOBFVA S.X. H.G.
0.35 41.6 At4g12070 826815 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;P S.X. H.G.
0.34 39.8 At1g64280 842733 NPR1 (NONEXPRESSER OF PR GENES 1) This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens. S.X. H.G.
0.29 30.3 At2g11520 815625 CRCK3 high overall homology to CRCK1 S.X. H.G.
0.28 30.3 At2g17760 816285 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PFMO S.X. H.G.
0.27 26.2 At3g14090 820625 ATEXO70D3 (exocyst subunit EXO70 family protein D3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.27 26.2 At1g31130 839998 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOA S.X. H.G.
0.26 24.4 At5g49570 835019 AtPNG1 (Arabidopsis thaliana peptide-N-glycanase 1) Encodes a protein that has peptide:N-glycanase activity in enzymatic assay in heterologous systems (although the activity was not detected in wild-type plants). S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.9 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
48.5 99.8 GSM133779 Lindsey_1-5_globular-basal_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
43.6 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.4 99.8 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
26.7 99.7 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.6 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.7 99.6 GSM133778 Lindsey_1-2_globular-apical_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.9 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.8 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.5 99.6 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 4e-18 93 At4g36860 829839 zinc ion binding F:zinc ion binding;P:unknown;C:plasma membrane;MOPFB C.G. S.X.
0.02 5e-2 40 At5g17890 831657 DAR4 (DA1-RELATED PROTEIN 4) F:protein binding, zinc ion binding, ATP binding;P:defense response, apoptosis;C:unknown;PMOFBVA C.G. S.X.
0.04 5e-2 40 At5g66610 836793 DAR7 (DA1-RELATED PROTEIN 7) F:zinc ion binding;P:unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.01 5e-2 40 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 5e-2 40 At1g74250 843765 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVA C.G. S.X.
0.02 2e-1 38 At5g66620 836794 DAR6 (DA1-RELATED PROTEIN 6) F:zinc ion binding;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.02 2e-1 38 At1g01860 839283 PFC1 (PALEFACE 1) dimethyladenosine transferase C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-19 97 Glycine max Gma.17010.1.S1_at AW832462 - - 1e-19 At1g19270 DA1 (DA 1) C.G. S.X.
0.18 2e-6 54 Hordeum vulgare Contig20846_at Contig20846 - - 3e-6 At4g36860 zinc ion binding C.G. S.X.
0.10 2e-9 65 Oryza sativa Os06g0182500 AK069056.1 - Ubiquitin interacting motif domain containingprotein 1e-6 At4g36860 zinc ion binding C.G. S.X.
0.40 9e-54 212 Populus trichocarpa PtpAffx.202094.1.S1_at pmrna4170 hypothetical protein - 5e-54 At1g19270 DA1 (DA 1) C.G. S.X.
0.12 4e-9 63 Triticum aestivum TaAffx.128547.1.S1_at BJ232676 - - 1e-8 At1g19270 DA1 (DA 1) C.G. S.X.
0.06 2e-5 50 Vitis vinifera 1609571_at BQ795107 hypothetical protein LOC100258119 - 6e-12 At4g36860 zinc ion binding C.G. S.X.
0.12 4e-4 46 Zea mays Zm.14545.1.A1_at CD448362 zinc ion binding protein - 5e-17 At4g36860 zinc ion binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046621 Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organ of an organism.
X GO:0048317 The process by which the anatomical structures of the seed are generated and organized. Morphogenesis pertains to the creation of form.
X GO:0048482 The process by which the anatomical structures of the ovule are generated and organized. Morphogenesis pertains to the creation of form. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage