Gene omics information

Query gene ID At1g19250
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At1g19250838508FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)FMO1 is required for full expression of TIR-NB-LRR–conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.S.X.H.G.
0.7486.1At3g28890822523AtRLP43 (Receptor Like Protein 43)F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAVS.X.H.G.
0.6781.6At3g44350823560anac061 (Arabidopsis NAC domain containing protein 61)F:transcription factor activity;P:multicellular organismal development, response to chitin, regulation of transcription;C:cellular_component unknown;PS.X.H.G.
0.6378.1At1g57650842141-F:unknown;P:defense response;C:cellular_component unknown;PMBOFAVS.X.H.G.
0.6378.1At1g61490842443S-locus protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAS.X.H.G.
0.6075.7At5g24540832525BGLU31 (BETA GLUCOSIDASE 31)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFAS.X.H.G.
0.4659.8At1g17615838338disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMOS.X.H.G.
0.4355.3At4g11470826752protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.3745.0At2g36440818218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
131.699.9GSM128719Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attack
119.299.9GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
118.799.9GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
95.299.9GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
93.899.9GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
88.399.9GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
85.699.9GSM226552Slice10JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.622e-125450At5g45180834554flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPC.G.S.X.
0.025e-240At1g55920842043ATSERAT2Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.C.G.S.X.
0.012e-138At3g57350824902-F:molecular_function unknown;P:transport;C:nuclear pore;MFPBOC.G.S.X.
0.012e-138At3g12810820463PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1)Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).C.G.S.X.
0.018e-136At5g44770834506DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOC.G.S.X.
0.028e-136At4g112112745699unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.018e-136At4g21680828255proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFC.G.S.X.
0.018e-136At3g22640821835PAP85F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POMC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.5913.1.S1_atBQ741175--8e-1At5g52200unknown proteinC.G.S.X.
0.022e+034Hordeum vulgareContig26236_atContig26236--1e-6At1g76820GTP binding / GTPaseC.G.S.X.
0.022e+036Oryza sativaOs03g01820009631.m00783--5e-2At1g53620unknown proteinC.G.S.X.
0.127e-550Populus trichocarpaPtpAffx.219713.1.S1_atpmrna35713hypothetical protein-5e-5At1g19250FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)C.G.S.X.
0.023e+034Triticum aestivumTaAffx.8597.1.S1_atCA622996--1e+0At5g48950thioesterase family proteinC.G.S.X.
0.029e-134Vitis vinifera1616732_atCB971918--2e-1At3g62550universal stress protein (USP) family proteinC.G.S.X.
0.021e+034Zea maysZmAffx.440.1.A1_atAI676978--2e-4At1g54410dehydrin family proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009627The salicylic acid mediated response to a pathogen which confers broad spectrum resistance.
XGO:0010204A series of molecular signals that is activated during defense response and does not depend upon R-genes.
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
XGO:0009626The rapid, localized death of plant cells in response to invasion by a pathogen.
XGO:0009870A series of molecular signals that depends upon R-genes and is activated during defense response.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage