CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g19200

Gene name senescence-associated protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.70 83.5 At1g19200 838503 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.84 91.9 At1g08310 837351 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA S.X. H.G.
0.84 91.9 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF S.X. H.G.
0.84 91.9 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV S.X. H.G.
0.84 91.9 At5g20790 832202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.76 87.4 At2g45130 819120 SPX3 (SPX DOMAIN GENE 3) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO S.X. H.G.
0.74 86.1 At5g20150 832137 SPX1 (SPX DOMAIN GENE 1) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA S.X. H.G.
0.64 78.9 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. S.X. H.G.
0.48 62.5 At3g43110 823370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
209.6 100.0 E-MEXP-791-raw-cel-1122937533
197.9 100.0 E-MEXP-791-raw-cel-1122937569
197.0 100.0 E-MEXP-1797-raw-cel-1669768039
176.5 100.0 E-ATMX-31-raw-cel-1516947882
170.6 100.0 E-ATMX-31-raw-cel-1516947916
160.5 99.9 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
148.8 99.9 E-MEXP-1797-raw-cel-1669768084
130.4 99.9 E-MEXP-791-raw-cel-1122937551
110.5 99.9 E-ATMX-31-raw-cel-1516947899
99.3 99.9 E-MEXP-1797-raw-cel-1669768003
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 4e-22 105 At1g74940 843833 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.10 2e-5 50 At1g53903 6241094 - F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.10 2e-5 50 At1g53885 841826 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 8e-2 38 At5g56800 835782 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 3e-1 36 At3g17750 821043 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA C.G. S.X.
0.01 3e-1 36 At2g20790 816608 protein binding F:protein binding;P:intracellular protein transport, vesicle-mediated transport;C:clathrin adaptor complex;MOFP C.G. S.X.
0.02 1e+0 34 At5g60870 836208 regulator of chromosome condensation (RCC1) family protein F:Ran GTPase binding;P:biological_process unknown;C:mitochondrion;MOBPFAV C.G. S.X.
0.01 1e+0 34 At4g02330 828064 ATPMEPCRB F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-5 50 Glycine max Gma.5309.1.S1_at BM092263 - - 2e-3 At5g20700 senescence-associated protein-related C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig24783_at Contig24783 - - 3e-2 At5g15460 MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2) C.G. S.X.
0.02 6e-1 36 Oryza sativa Os02g0780800 9630.m05348 - Helicase, C-terminal domain containing protein 3e-1 At2g34480 60S ribosomal protein L18A (RPL18aB) C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.212537.1.S1_at pmrna24555 hypothetical protein - 4e-2 At1g19200 senescence-associated protein-related C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.53801.1.S1_at CA688966 - - 2e-1 At1g19200 senescence-associated protein-related C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1617729_s_at CB344124 hypothetical protein LOC100249711 - 1e+0 At4g27580 unknown protein C.G. S.X.
0.03 5e-1 34 Zea mays ZmAffx.126.1.A1_at AI665940 - - 3e+0 At5g14910 heavy-metal-associated domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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