Gene omics information

Query gene ID At1g18870
Gene name ICS2 (ISOCHORISMATE SYNTHASE 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At1g18870838468ICS2 (ISOCHORISMATE SYNTHASE 2)Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).S.X.H.G.
0.4050.8At2g16005816096MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFOS.X.H.G.
0.2217.5At3g48350823993cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFS.X.H.G.
0.146.8At1g72140843545proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFS.X.H.G.
0.124.9At2g39310818516JAL22 (JACALIN-RELATED LECTIN 22)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
103.599.9GSM131206AtGen_D-40_3-WL_REP3_ATH1GSE5617AtGenExpress: Light treatments
91.299.9GSM131203AtGen_D-37_3-BL_REP3_ATH1GSE5617AtGenExpress: Light treatments
88.399.9GSM131204AtGen_D-38_3-AL_REP3_ATH1GSE5617AtGenExpress: Light treatments
85.499.9GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
80.499.9GSM131202AtGen_D-36_3-RL_REP3_ATH1GSE5617AtGenExpress: Light treatments
73.199.9GSM131176AtGen_D-8_1-WL_REP1_ATH1GSE5617AtGenExpress: Light treatments
68.699.9GSM131189AtGen_D-22_2-AL_REP2_ATH1GSE5617AtGenExpress: Light treatments
68.399.9GSM131174AtGen_D-6_1-AL_REP1_ATH1GSE5617AtGenExpress: Light treatments
57.899.8GSM131188AtGen_D-21_2-BL_REP2_ATH1GSE5617AtGenExpress: Light treatments
54.399.8GSM131187AtGen_D-20_2-RL_REP2_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.726e-128458At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).C.G.S.X.
0.018e-136At3g04450819601transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POMBFC.G.S.X.
0.018e-136At2g29040817452exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;OMPFBVC.G.S.X.
0.023e+034At5g02580831095unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.013e+034At5g07300830621BON2 (BONZAI 2)Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms.C.G.S.X.
0.013e+034At5g04060830285dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus;PBOFMC.G.S.X.
0.013e+034At5g40200834018DegP9 (DegP protease 9)Encodes a putative DegP protease.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e+034Glycine maxGmaAffx.91525.1.S1_atCF8072501-aminocyclopropane-1-carboxylate synthase (ACS)-3e-1At4g21570unknown proteinC.G.S.X.
0.029e-238Hordeum vulgareContig8434_atContig8434--1e-1At1g74710isochorismate synthase 1 (ICS1) / isochorismate mutaseC.G.S.X.
0.022e+036Oryza sativaOsAffx.487.1.S1_at---0C.G.S.X.
0.105e-963Populus trichocarpaPtpAffx.210516.1.S1_atpmrna20624isochorismate synthase-1e-11At1g74710isochorismate synthase 1 (ICS1) / isochorismate mutaseC.G.S.X.
0.022e-138Triticum aestivumTaAffx.37536.1.S1_atBJ274653--5e-1At1g74710isochorismate synthase 1 (ICS1) / isochorismate mutaseC.G.S.X.
0.029e-134Vitis vinifera1617667_atCF213861--1e+0At4g18510CLE2 (CLAVATA3/ESR-RELATED)C.G.S.X.
0.021e+034Zea maysZm.17747.1.S1_atCK370981hypothetical protein LOC100193554-1e+0At2g29390SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042372The chemical reactions and pathways resulting in the formation of phylloquinone, vitamin K1, a quinone-derived compound synthesized by green plants.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00130Link to KEGG PATHWAYUbiquinone and other terpenoid-quinone biosynthesis
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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