CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g18870

Gene name ICS2 (ISOCHORISMATE SYNTHASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g18870 838468 ICS2 (ISOCHORISMATE SYNTHASE 2) Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). S.X. H.G.
0.40 50.8 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO S.X. H.G.
0.22 17.5 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF S.X. H.G.
0.14 6.8 At1g72140 843545 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF S.X. H.G.
0.12 4.9 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.5 99.9 GSM131206 AtGen_D-40_3-WL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
91.2 99.9 GSM131203 AtGen_D-37_3-BL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
88.3 99.9 GSM131204 AtGen_D-38_3-AL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
85.4 99.9 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
80.4 99.9 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
73.1 99.9 GSM131176 AtGen_D-8_1-WL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
68.6 99.9 GSM131189 AtGen_D-22_2-AL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
68.3 99.9 GSM131174 AtGen_D-6_1-AL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
57.8 99.8 GSM131188 AtGen_D-21_2-BL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
54.3 99.8 GSM131187 AtGen_D-20_2-RL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 6e-128 458 At1g74710 843810 isochorismate synthase 1 (ICS1) / isochorismate mutase Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870). C.G. S.X.
0.01 8e-1 36 At3g04450 819601 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POMBF C.G. S.X.
0.01 8e-1 36 At2g29040 817452 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;OMPFBV C.G. S.X.
0.02 3e+0 34 At5g02580 831095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 3e+0 34 At5g07300 830621 BON2 (BONZAI 2) Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. C.G. S.X.
0.01 3e+0 34 At5g04060 830285 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;PBOFM C.G. S.X.
0.01 3e+0 34 At5g40200 834018 DegP9 (DegP protease 9) Encodes a putative DegP protease. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.91525.1.S1_at CF807250 1-aminocyclopropane-1-carboxylate synthase (ACS) - 3e-1 At4g21570 unknown protein C.G. S.X.
0.02 9e-2 38 Hordeum vulgare Contig8434_at Contig8434 - - 1e-1 At1g74710 isochorismate synthase 1 (ICS1) / isochorismate mutase C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.487.1.S1_at - - - 0 C.G. S.X.
0.10 5e-9 63 Populus trichocarpa PtpAffx.210516.1.S1_at pmrna20624 isochorismate synthase - 1e-11 At1g74710 isochorismate synthase 1 (ICS1) / isochorismate mutase C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.37536.1.S1_at BJ274653 - - 5e-1 At1g74710 isochorismate synthase 1 (ICS1) / isochorismate mutase C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1617667_at CF213861 - - 1e+0 At4g18510 CLE2 (CLAVATA3/ESR-RELATED) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.17747.1.S1_at CK370981 hypothetical protein LOC100193554 - 1e+0 At2g29390 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042372 The chemical reactions and pathways resulting in the formation of phylloquinone, vitamin K1, a quinone-derived compound synthesized by green plants.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00130 Ubiquinone and other terpenoid-quinone biosynthesis
01061 Biosynthesis of phenylpropanoids
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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