CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g18860

Gene name WRKY61

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At1g18860 838467 WRKY61 member of WRKY Transcription Factor; Group II-b S.X. H.G.
0.33 38.1 At2g17060 816211 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
0.29 30.3 At1g61480 842442 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.29 30.3 At1g79320 844270 AtMC6 (metacaspase 6) F:cysteine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;BOFPA S.X. H.G.
0.24 20.7 At3g46730 823826 disease resistance protein (CC-NBS class), putative F:ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
268.6 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
206.5 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
205.9 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
200.5 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
194.2 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
190.9 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
187.1 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
174.2 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
164.9 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
157.8 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.18 3e-34 147 At5g15130 831365 WRKY72 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.13 1e-27 125 At1g68150 843143 WRKY9 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.08 2e-16 87 At4g01720 828001 WRKY47 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.04 2e-7 57 At1g62300 842527 WRKY6 transcription factor WRKY6 (WRKY6) C.G. S.X.
0.04 1e-5 52 At4g22070 828296 WRKY31 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.01 7e-4 46 At5g49430 835003 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV C.G. S.X.
0.08 7e-4 46 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.04 7e-4 46 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. C.G. S.X.
0.02 3e-3 44 At5g21280 832258 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 4e-3 44 Glycine max GmaAffx.21523.2.S1_at BE021411 - - 2e-25 At4g04450 WRKY42 C.G. S.X.
0.02 3e-1 36 Hordeum vulgare HVSMEl0002A04r2_at HVSMEl0002A04r2 - - 2e-1 At1g23660 unknown protein C.G. S.X.
0.07 1e-7 59 Oryza sativa Os06g0146250 9634.m00460 - - 5e-18 At5g15130 WRKY72 C.G. S.X.
0.14 2e-32 141 Populus trichocarpa PtpAffx.213917.1.S1_at pmrna27134 hypothetical protein - 2e-32 At1g18860 WRKY61 C.G. S.X.
0.02 5e-2 40 Triticum aestivum TaAffx.85801.1.S1_at CA619496 - - 1e+0 At3g15680 zinc finger (Ran-binding) family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1619756_at CB003378 hypothetical protein LOC100252863 - 2e-12 At3g62950 glutaredoxin family protein C.G. S.X.
0.02 3e-1 36 Zea mays Zm.3780.1.S1_at AW438304 low-molecular-weight cysteine-rich protein LCR69 - 9e-2 At1g47317 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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