CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g18680

Gene name HNH endonuclease domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g18680 838449 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:N-terminal protein myristoylation;C:chloroplast;POB S.X. H.G.
0.34 39.8 At3g59810 825150 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;AMFOP S.X. H.G.
0.32 35.7 At3g57785 824948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFM S.X. H.G.
0.31 33.8 At5g54760 835566 eukaryotic translation initiation factor SUI1, putative F:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVB S.X. H.G.
0.29 30.3 At2g29590 817508 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
0.28 30.3 At5g17840 831652 chaperone protein dnaJ-related F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;POBM S.X. H.G.
0.28 30.3 At5g63670 836487 SPT42 (SPT4 HOMOLOG 2) F:positive transcription elongation factor activity, zinc ion binding;P:positive regulation of transcription, N-terminal protein myristoylation;C:nucleus;MFOP S.X. H.G.
0.28 30.3 At2g41530 818751 SFGH (S-FORMYLGLUTATHIONE HYDROLASE) Encodes a protein with S-formylglutathione hydrolase activity. S.X. H.G.
0.28 30.3 At2g20930 816627 - F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP S.X. H.G.
0.27 26.2 At5g42190 834224 ASK2 (ARABIDOPSIS SKP1-LIKE 2) Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
187.8 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
67.5 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.0 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
57.7 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.4 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.4 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.1 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.5 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.4 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.7 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-3 44 At3g47490 823903 HNH endonuclease domain-containing protein F:nucleic acid binding, endonuclease activity;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.01 7e-2 38 At5g53060 835386 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV C.G. S.X.
0.02 7e-2 38 At3g50190 824181 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.01 7e-2 38 At2g41900 818790 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFBVA C.G. S.X.
0.02 7e-2 38 At1g54200 841860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB C.G. S.X.
0.02 3e-1 36 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. C.G. S.X.
0.03 3e-1 36 At3g07470 819935 unknown protein F:unknown;P:biological_process unknown;C:vacuole;PO C.G. S.X.
0.05 3e-1 36 At3g44950 823630 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-18 93 Glycine max Gma.3687.1.S1_at BU084678 - - 1e-18 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig11437_s_at Contig11437 - - 7e-2 At3g06780 glycine-rich protein C.G. S.X.
0.04 2e-3 44 Oryza sativa Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.09 1e-1 38 Populus trichocarpa PtpAffx.210496.1.S1_at pmrna20595 hypothetical protein - 6e-2 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.11 1e-9 63 Triticum aestivum Ta.6417.1.S1_at BJ262924 - - 2e-9 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.19 3e-20 97 Vitis vinifera 1617882_at CB346978 hypothetical protein LOC100265703 - 1e-19 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.999.1.S1_at AI881222 hypothetical protein LOC100279401 - 5e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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