CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g18400

Gene name BEE1 (BR Enhanced Expression 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g18400 838421 BEE1 (BR Enhanced Expression 1) F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMO S.X. H.G.
0.20 14.4 At1g21830 838785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.18 11.4 At2g42320 818833 nucleolar protein gar2-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA S.X. H.G.
0.18 11.4 At3g11700 820342 FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) F:molecular_function unknown;P:response to cyclopentenone, cell adhesion;C:vacuole;BPOM S.X. H.G.
0.18 11.4 At4g25620 828667 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMFBV S.X. H.G.
0.15 7.8 At2g06850 815247 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) endoxyloglucan transferase (EXGT-A1) gene S.X. H.G.
0.11 4.1 At5g55630 835657 ATKCO1 Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins. S.X. H.G.
0.09 2.8 At5g64330 836554 NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3) Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains. S.X. H.G.
0.04 0.9 At2g25800 817122 - F:unknown;P:biological_process unknown;C:unknown;POMFB S.X. H.G.
0.03 0.6 At2g18910 816407 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBOV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
133.0 99.9 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
129.1 99.9 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
111.3 99.9 E-MEXP-807-raw-cel-1173273196
66.4 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
33.0 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
32.7 99.7 Millenaar_A2_ETH_Rep1_ATH1
31.4 99.7 E-MEXP-807-raw-cel-1173273005
30.5 99.7 E-MEXP-807-raw-cel-1173272977
29.2 99.7 GSM216895 ga1-3_shoots_1h_water_repl3 GSE8739 Early gibberellin responses in Arabidopsis
26.8 99.7 GSM216893 ga1-3_shoots_1h_water_repl2 GSE8739 Early gibberellin responses in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 5e-96 351 At1g73830 843719 BEE3 (BR ENHANCED EXPRESSION 3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO C.G. S.X.
0.10 1e-7 57 At4g34530 829604 CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1) Encodes a transcription factor CIB1 (cryptochrome-interacting basic-helix-loop-helix). CIB1 interacts with CRY2 (cryptochrome 2) in a blue light-specific manner in yeast and Arabidopsis cells, and it acts together with additional CIB1-related proteins to promote CRY2-dependent floral initiation. CIB1 positively regulates FT expression. C.G. S.X.
0.10 2e-6 54 At5g50915 835164 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM C.G. S.X.
0.10 2e-6 54 At2g18300 816346 basic helix-loop-helix (bHLH) family protein F:transcription factor activity;P:response to cytokinin stimulus, regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.07 3e-5 50 At4g36540 829806 BEE2 (BR Enhanced Expression 2) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO C.G. S.X.
0.04 2e-3 44 At5g62610 836382 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-7 57 Glycine max GmaAffx.58125.1.A1_at BE347561 - - 6e-8 At1g18400 BEE1 (BR Enhanced Expression 1) C.G. S.X.
0.06 1e-2 40 Hordeum vulgare Contig13025_at Contig13025 - - 3e-12 At1g26260 CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5) C.G. S.X.
0.04 5e-2 40 Oryza sativa Os02g0705500 AK119183.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 7e-4 At4g36540 BEE2 (BR Enhanced Expression 2) C.G. S.X.
0.22 5e-35 149 Populus trichocarpa PtpAffx.30617.1.S1_a_at DN486396 hypothetical protein - 1e-35 At1g18400 BEE1 (BR Enhanced Expression 1) C.G. S.X.
0.05 4e-1 36 Triticum aestivum Ta.4311.1.S1_at BJ272339 - - 3e-15 At4g34530 CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1) C.G. S.X.
0.05 5e-7 54 Vitis vinifera 1621644_at CB004591 - - 3e-9 At3g23690 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 7e-1 34 Zea mays Zm.13546.1.S1_at AY108255.1 protein SPATULA - 3e-17 At1g59640 ZCW32 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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