Gene omics information

Query gene ID At1g18400
Gene name BEE1 (BR Enhanced Expression 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g18400838421BEE1 (BR Enhanced Expression 1)F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMOS.X.H.G.
0.2014.4At1g21830838785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.1811.4At2g42320818833nucleolar protein gar2-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVAS.X.H.G.
0.1811.4At3g11700820342FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR)F:molecular_function unknown;P:response to cyclopentenone, cell adhesion;C:vacuole;BPOMS.X.H.G.
0.1811.4At4g25620828667hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OPMFBVS.X.H.G.
0.157.8At2g06850815247EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)endoxyloglucan transferase (EXGT-A1) geneS.X.H.G.
0.114.1At5g55630835657ATKCO1Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins.S.X.H.G.
0.092.8At5g64330836554NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains.S.X.H.G.
0.040.9At2g25800817122-F:unknown;P:biological_process unknown;C:unknown;POMFBS.X.H.G.
0.030.6At2g18910816407hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
133.099.9GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination Study
129.199.9GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination Study
111.399.9E-MEXP-807-raw-cel-1173273196
66.499.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
33.099.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
32.799.7Millenaar_A2_ETH_Rep1_ATH1
31.499.7E-MEXP-807-raw-cel-1173273005
30.599.7E-MEXP-807-raw-cel-1173272977
29.299.7GSM216895ga1-3_shoots_1h_water_repl3GSE8739Early gibberellin responses in Arabidopsis
26.899.7GSM216893ga1-3_shoots_1h_water_repl2GSE8739Early gibberellin responses in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.455e-96351At1g73830843719BEE3 (BR ENHANCED EXPRESSION 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBOC.G.S.X.
0.101e-757At4g34530829604CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1)Encodes a transcription factor CIB1 (cryptochrome-interacting basic-helix-loop-helix). CIB1 interacts with CRY2 (cryptochrome 2) in a blue light-specific manner in yeast and Arabidopsis cells, and it acts together with additional CIB1-related proteins to promote CRY2-dependent floral initiation. CIB1 positively regulates FT expression.C.G.S.X.
0.102e-654At5g50915835164basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFMC.G.S.X.
0.102e-654At2g18300816346basic helix-loop-helix (bHLH) family proteinF:transcription factor activity;P:response to cytokinin stimulus, regulation of transcription;C:nucleus;PMFOC.G.S.X.
0.073e-550At4g36540829806BEE2 (BR Enhanced Expression 2)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOC.G.S.X.
0.042e-344At5g62610836382basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.131e-757Glycine maxGmaAffx.58125.1.A1_atBE347561--6e-8At1g18400BEE1 (BR Enhanced Expression 1)C.G.S.X.
0.061e-240Hordeum vulgareContig13025_atContig13025--3e-12At1g26260CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)C.G.S.X.
0.045e-240Oryza sativaOs02g0705500AK119183.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein7e-4At4g36540BEE2 (BR Enhanced Expression 2)C.G.S.X.
0.225e-35149Populus trichocarpaPtpAffx.30617.1.S1_a_atDN486396hypothetical protein-1e-35At1g18400BEE1 (BR Enhanced Expression 1)C.G.S.X.
0.054e-136Triticum aestivumTa.4311.1.S1_atBJ272339--3e-15At4g34530CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1)C.G.S.X.
0.055e-754Vitis vinifera1621644_atCB004591--3e-9At3g23690basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.037e-134Zea maysZm.13546.1.S1_atAY108255.1protein SPATULA-3e-17At1g59640ZCW32C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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