CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g18350

Gene name ATMKK7

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g18350 838416 ATMKK7 MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance. S.X. H.G.
0.40 50.8 At5g20430 832165 mob1/phocein family protein F:protein binding;P:biological_process unknown;C:nucleus, phragmoplast;MFOP S.X. H.G.
0.29 30.3 At4g25270 828630 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFB S.X. H.G.
0.22 17.5 At4g29560 829077 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.03 0.6 At5g27550 832815 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
639.8 100.0 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
442.5 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
364.1 100.0 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
59.6 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
59.0 99.8 GSM176880 AWP_Control_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
56.3 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
49.6 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.5 99.8 E-MEXP-807-raw-cel-1173272977
47.8 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
46.8 99.8 GSM90297 Transgenic LEC2GR Seedling 4h Dex 2 GSE3959 RNA changes induced by LEAFY COTYLEDON2 activity in Arabidopsis seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 7e-108 391 At1g73500 843685 MKK9 (MAP KINASE KINASE 9) member of MAP Kinase Kinase family. Autophosphorylates and also phosphorylates MPK3 and MPK6. Independently involved in ethylene and calmalexin biosynthesis. Induces transcription of ACS2, ACS6, ERF1, ERF2, ERF5, ERF6, CYP79B2, CYP79B3, CYP71A13 and PAD3. C.G. S.X.
0.04 1e-4 48 At3g06230 819797 ATMKK8 member of MAP Kinase Kinase C.G. S.X.
0.01 3e-2 40 At1g29740 839852 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 1e-1 38 At5g50000 835064 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 1e-1 38 At2g47010 819315 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.02 5e-1 36 At5g09890 830849 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-2 42 Glycine max Gma.3189.1.S1_a_at AW349565 - - 9e-3 At1g18350 ATMKK7 C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HVSMEb0007D15r2_at HVSMEb0007D15r2 - - 2e-1 At4g15120 VQ motif-containing protein C.G. S.X.
0.02 4e+0 34 Oryza sativa Os02g0757100 AK070419.1 - Phi-1 protein 4e-2 At4g08950 EXO (EXORDIUM) C.G. S.X.
0.05 3e-3 44 Populus trichocarpa PtpAffx.208655.1.S1_s_at pmrna17176 hypothetical protein - 2e-3 At1g18350 ATMKK7 C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.52986.1.S1_at CA698061 - - 1e+1 At3g44950 glycine-rich protein C.G. S.X.
0.02 5e-1 34 Vitis vinifera 1622453_at CB002354 - - 1e-3 At2g13690 PRLI-interacting factor, putative C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.467.1.A1_at AI677406 calmodulin-like - 1e-2 At3g43810 CAM7 (CALMODULIN 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0002229 Reactions triggered in response to the presence of oomycetes that act to protect the cell or organism.
X GO:0009862 The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0009926 The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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