CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g18100

Gene name E12A11

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g18100 838390 E12A11 E12A11 protein (E12A11) S.X. H.G.
0.91 95.6 At1g65880 842900 BZO1 (BENZOYLOXYGLUCOSINOLATE 1) Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds. S.X. H.G.
0.83 91.4 At5g51490 835223 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM S.X. H.G.
0.78 88.6 At2g25940 817135 ALPHA-VPE (alpha-vacuolar processing enzyme) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. S.X. H.G.
0.76 87.4 At1g73290 843663 scpl5 (serine carboxypeptidase-like 5) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.75 86.9 At1g25410 839127 ATIPT6 AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds S.X. H.G.
0.73 85.5 At5g07500 830642 PEI1 Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation. S.X. H.G.
0.71 84.2 At3g44460 823571 DPBF2 basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons. S.X. H.G.
0.69 82.9 At4g25980 828704 cationic peroxidase, putative F:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOM S.X. H.G.
0.67 81.6 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
465.2 100.0 E-ATMX-1-raw-cel-1112746154
407.7 100.0 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
391.8 100.0 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
382.2 100.0 GSM131696 ATGE_79_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
372.5 100.0 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
349.8 100.0 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
341.9 100.0 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
335.8 100.0 E-ATMX-1-raw-cel-1112746095
175.3 100.0 E-ATMX-1-raw-cel-1112746267
171.0 100.0 E-ATMX-1-raw-cel-1112746209
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 36 At3g57410 824908 VLN3 (VILLIN 3) Encodes a protein with high homology to animal villin. C.G. S.X.
0.01 3e-1 36 At2g41740 818773 VLN2 (VILLIN 2) Encodes a protein with high homology to animal villin. C.G. S.X.
0.01 1e+0 34 At5g17910 831659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVA C.G. S.X.
0.03 1e+0 34 At5g16870 831550 aminoacyl-tRNA hydrolase F:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;OAMFPVB C.G. S.X.
0.04 1e+0 34 At5g27780 832840 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P C.G. S.X.
0.01 1e+0 34 At2g17820 816291 ATHK1 (histidine kinase 1) Encodes a member of the histidine kinase family. C.G. S.X.
0.04 1e+0 34 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P C.G. S.X.
0.01 1e+0 34 At1g73850 843721 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV C.G. S.X.
0.04 4e+0 32 At5g62040 836324 brother of FT and TFL1 protein (BFT) F:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;PMFOVB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 4e-4 46 Glycine max Gma.6921.1.S1_at BE823209 - - 4e-4 At1g18100 E12A11 C.G. S.X.
0.10 3e-5 48 Hordeum vulgare Contig6604_at Contig6604 - - 1e-4 At1g18100 E12A11 C.G. S.X.
0.04 1e-4 48 Oryza sativa Os01g0111600 AK110620.1 - Phosphatidylethanolamine-binding protein familyprotein 1e-4 At1g18100 E12A11 C.G. S.X.
0.12 2e-5 50 Populus trichocarpa Ptp.3985.1.S1_at AB181241.1 hypothetical protein - 2e-5 At1g18100 E12A11 C.G. S.X.
0.10 3e-4 46 Triticum aestivum Ta.25569.1.S1_at BE424859 - - 5e-4 At1g18100 E12A11 C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1611692_at CB343565 - - 4e+0 At3g47720 SRO4 (SIMILAR TO RCD ONE 4) C.G. S.X.
0.07 1e-1 36 Zea mays Zm.15564.1.A1_at CD446261 ZCN11 protein - 5e-1 At1g18100 E12A11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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