CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g18050

Gene name SWAP (Suppressor-of-White-APricot)/surp domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.18 11.4 At1g18050 838385 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein F:RNA binding;P:RNA processing;C:cellular_component unknown;MPOF S.X. H.G.
0.46 59.8 At1g76780 844012 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.28 30.3 At1g54880 841927 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.26 24.4 At5g18160 831934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.22 17.5 At4g26020 828708 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
426.3 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
348.7 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
315.0 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
305.7 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
286.4 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
262.7 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
262.2 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
261.3 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
256.7 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
254.8 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 5e-16 85 At3g30370 822738 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At1g14650 838027 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein F:RNA binding;P:protein modification process, RNA processing;C:unknown;MPFOBVA C.G. S.X.
0.00 4e-1 36 At1g72270 843559 unknown protein F:unknown;P:unknown;C:mitochondrion;MPFO C.G. S.X.
0.03 2e+0 34 At5g43150 834332 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.03 2e+0 34 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 C.G. S.X.
0.01 2e+0 34 At5g47560 834806 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) Encodes a tonoplast malate/fumarate transporter. C.G. S.X.
0.01 2e+0 34 At5g18550 831973 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.5761.3.S1_at BM885376 - - 8e-4 At4g34160 CYCD3 C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig15016_at Contig15016 - - 1e+0 At5g01880 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.27125.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.135999.1.A1_at CK094043 hypothetical protein - 7e-1 At1g18050 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.80611.1.S1_at CA694763 - - 1e+0 At4g08230 glycine-rich protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1614659_at CF512248 hypothetical protein LOC100260731 - 5e-25 At3g57050 CBL (cystathionine beta-lyase) C.G. S.X.
0.03 7e-1 34 Zea mays Zm.1078.1.A1_at CF635930 membrane steroid-binding protein 1 - 2e+0 At1g18050 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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