Gene omics information

Query gene ID At1g18050
Gene name SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1811.4At1g18050838385SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinF:RNA binding;P:RNA processing;C:cellular_component unknown;MPOFS.X.H.G.
0.4659.8At1g76780844012-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.2830.3At1g54880841927unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2624.4At5g18160831934F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2217.5At4g26020828708-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
426.3100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
348.7100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
315.0100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
305.7100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
286.4100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
262.7100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
262.2100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
261.3100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
256.7100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
254.8100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.135e-1685At3g30370822738-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e-138At1g14650838027SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family proteinF:RNA binding;P:protein modification process, RNA processing;C:unknown;MPFOBVAC.G.S.X.
0.004e-136At1g72270843559unknown proteinF:unknown;P:unknown;C:mitochondrion;MPFOC.G.S.X.
0.032e+034At5g43150834332unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PC.G.S.X.
0.032e+034At5g60910836212AGL8 (agamous-like 8)MADS box gene negatively regulated by APETALA1C.G.S.X.
0.012e+034At5g47560834806TDT (TONOPLAST DICARBOXYLATE TRANSPORTER)Encodes a tonoplast malate/fumarate transporter.C.G.S.X.
0.012e+034At5g18550831973nucleic acid binding / zinc ion bindingF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.5761.3.S1_atBM885376--8e-4At4g34160CYCD3C.G.S.X.
0.023e+032Hordeum vulgareContig15016_atContig15016--1e+0At5g01880zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.043e+034Oryza sativaOsAffx.27125.1.S1_at---0C.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.135999.1.A1_atCK094043hypothetical protein-7e-1At1g18050SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.80611.1.S1_atCA694763--1e+0At4g08230glycine-rich proteinC.G.S.X.
0.031e-136Vitis vinifera1614659_atCF512248hypothetical protein LOC100260731-5e-25At3g57050CBL (cystathionine beta-lyase)C.G.S.X.
0.037e-134Zea maysZm.1078.1.A1_atCF635930membrane steroid-binding protein 1-2e+0At1g18050SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006396Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage