Gene omics information

Query gene ID At1g17990
Gene name 12-oxophytodienoate reductase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g1799083837912-oxophytodienoate reductase, putativeF:unknown;P:unknown;C:unknown;BOFPAMS.X.H.G.
0.4862.5At4g08920826470CRY1 (CRYPTOCHROME 1)Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings.S.X.H.G.
0.3032.1At2g46220819229unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPMOS.X.H.G.
0.2930.3At4g13830827017J20 (DNAJ-LIKE 20)DnaJ-like protein (J20); nuclear geneS.X.H.G.
0.2930.3At1g19660838553wound-responsive family proteinF:unknown;P:response to wounding;C:unknown;BOPAS.X.H.G.
0.2930.3At2g30950817646VAR2 (VARIEGATED 2)Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.S.X.H.G.
0.2726.2At5g50920835165CLPC1Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.S.X.H.G.
0.2522.6At2g14910815980unknown proteinF:unknown;P:unknown;C:chloroplast;BOPMS.X.H.G.
0.2522.6At5g44870834517disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAS.X.H.G.
0.2522.6At1g77930844128DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
60.399.8GSM133819Yang_1-4_old-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
54.699.8GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
33.299.7GSM133817Yang_1-2_old-pod_Rep1_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
30.999.7GSM7718004h low CO2 + dark replicate BGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expression
28.199.7GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
21.099.6E-TABM-62-raw-cel-720977840
18.899.5GSM133816Yang_1-1_young-pod_Rep1_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
17.199.5GSM269830T6 leaf-well watered-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
16.699.5GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
16.499.5GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
1.0001606At1g1802083838212-oxophytodienoate reductase, putativeF:unknown;P:unknown;C:unknown;BOFPAMC.G.S.X.
0.462e-46186At1g76690844002OPR2Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.C.G.S.X.
0.413e-2099At1g76680844001OPR1Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.C.G.S.X.
0.297e-961At1g0940083746212-oxophytodienoate reductase, putativeF:unknown;P:unknown;C:mitochondrion;BOFPAMC.G.S.X.
0.014e-136At5g59190836037subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:response to cadmium ion, proteolysis;C:cellular_component unknown;BPOFAMC.G.S.X.
0.054e-136At2g06050815160OPR3 (OPDA-REDUCTASE 3)Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-448Glycine maxGmaAffx.67883.1.S1_atBG046605--1e-15At1g76690OPR2C.G.S.X.
0.061e-240Hordeum vulgareContig5146_atContig5146--4e-21At1g76690OPR2C.G.S.X.
0.095e-240Oryza sativaOs.15627.1.A1_at---0C.G.S.X.
0.143e-1583Populus trichocarpaPtpAffx.216720.1.S1_s_atpmrna31684hypothetical protein-1e-14At1g76690OPR2C.G.S.X.
0.103e-240Triticum aestivumTa.5509.3.S1_atCA604882--1e-2At1g1799012-oxophytodienoate reductase, putativeC.G.S.X.
0.108e-959Vitis vinifera1619407_s_atCA809049hypothetical protein LOC100256548-3e-12At1g76690OPR2C.G.S.X.
0.132e-136Zea maysZm.7548.1.A1_atBM07890312-oxo-phytodienoic acid reductase5-5e-11At1g76690OPR2C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00056Link to KaPPA-View 4Jasmonic acid biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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