CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g17810

Gene name BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete S.X. H.G.
1.00 100.0 At1g54860 841925 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.89 94.6 At5g07190 830610 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function. S.X. H.G.
0.86 93.1 At1g03890 839379 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMO S.X. H.G.
0.67 81.6 At4g26740 828781 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
324.0 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
305.8 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
303.1 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
299.2 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
292.7 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
290.9 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
286.8 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
252.3 100.0 E-ATMX-1-raw-cel-1112746209
227.6 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
227.6 100.0 E-ATMX-1-raw-cel-1112746095
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 1e-50 200 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner C.G. S.X.
0.06 4e-7 56 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA C.G. S.X.
0.05 4e-4 46 At2g45960 819204 PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. C.G. S.X.
0.03 6e-3 42 At2g16850 816186 PIP2 F:water channel activity;P:transport;C:membrane;BPMOFAV C.G. S.X.
0.04 4e-1 36 At4g00430 827956 PIP1 a member of the plasma membrane intrinsic protein subfamily PIP1. C.G. S.X.
0.04 4e-1 36 At3g53420 824510 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev C.G. S.X.
0.02 2e+0 34 At5g21990 832259 tetratricopeptide repeat (TPR)-containing protein F:binding;P:protein folding;C:cellular_component unknown;MOPFBA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 1e-14 81 Glycine max GmaAffx.84879.1.S1_at AI735921 - - 6e-15 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) C.G. S.X.
0.04 3e+0 32 Hordeum vulgare HO06P19S_at HO06P19S - - 3e+0 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) C.G. S.X.
0.03 8e-1 36 Oryza sativa Os04g0559700 AK058323.1 - HvPIP1;5 protein 2e-35 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) C.G. S.X.
0.41 1e-20 101 Populus trichocarpa PtpAffx.217930.1.S1_at pmrna33396 aquaporin, MIP family, TIP subfamily - 8e-21 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.31585.1.S1_at CA612461 - - 1e-1 At5g64813 LIP1 (Light Insensitive Period1) C.G. S.X.
0.12 9e-15 79 Vitis vinifera 1619180_at CB976469 hypothetical protein LOC100252897 - 2e-14 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.621.1.S1_at AF326509.1 tonoplast intrinsic protein5 - 3e-2 At3g16240 DELTA-TIP C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage