Gene omics information

Query gene ID At1g17790
Gene name DNA-binding bromodomain-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g17790838357DNA-binding bromodomain-containing proteinF:DNA binding;P:biological_process unknown;C:chloroplast;MOFBPVAS.X.H.G.
0.3948.4At4g14920827150DNA binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOS.X.H.G.
0.3643.6At2g22310816763ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)Encodes a ubiquitin-specific protease.S.X.H.G.
0.3643.6At3g17450821009hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFBS.X.H.G.
0.3541.6At1g21700838774ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C)a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).S.X.H.G.
0.3541.6At5g03415831847DPBEncodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.S.X.H.G.
0.3439.8At1g17760838354CSTF77Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit.S.X.H.G.
0.3439.8At4g31200829247SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinF:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVAS.X.H.G.
0.3338.1At2g38660818448tetrahydrofolate dehydrogenase/cyclohydrolase, putativeF:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:unknown;OBMFPAS.X.H.G.
0.3338.1At1g22860838891unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
140.099.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
80.099.9GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
57.499.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.508e-50198At1g73150843646GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3)Bromodomain and extra terminal domain family protein. Binds to acetyl-histone H3. Binding is reduced when GTE3 is SUMOylated by SIZ1.C.G.S.X.
0.022e-448At1g29790839857-F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PC.G.S.X.
0.028e-446At5g38300833812unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.023e-344At5g46730834716glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAC.G.S.X.
0.023e-344At5g02480831883-F:unknown;P:unknown;C:cellular_component unknown;PC.G.S.X.
0.023e-344At4g22770828376DNA-binding family proteinF:DNA binding;P:unknown;C:unknown;PBFMOVC.G.S.X.
0.023e-344At1g20900838683ESC (ESCAROLA)Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light.C.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-242Glycine maxGmaAffx.86256.1.S1_atBI469416--4e+0At5g11860NLI interacting factor (NIF) family proteinC.G.S.X.
0.096e-342Hordeum vulgareContig11564_atContig11564--1e-2At1g17790DNA-binding bromodomain-containing proteinC.G.S.X.
0.074e-448Oryza sativaOs01g02143009629.m01113-Hypothetical protein3e-4At1g17790DNA-binding bromodomain-containing proteinC.G.S.X.
0.122e-552Populus trichocarpaPtpAffx.209857.1.S1_atpmrna19430global transcription factor group-6e-16At1g73150GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3)C.G.S.X.
0.025e-240Triticum aestivumTaAffx.55846.1.S1_atCA660442--4e-3At3g42310unknown proteinC.G.S.X.
0.026e-238Vitis vinifera1619942_atCF568925--3e+0At3g57370transcription factor IIB (TFIIB) family proteinC.G.S.X.
0.062e-240Zea maysZmAffx.97.1.A1_atAI665446--1e-2At1g17790DNA-binding bromodomain-containing proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage