CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g17710

Gene name phosphatase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g17710 838347 phosphatase F:phosphatase activity;P:metabolic process;C:unknown;MPOBF S.X. H.G.
1.00 100.0 At1g08310 837351 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA S.X. H.G.
1.00 100.0 At2g11810 815657 MGDC MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions. S.X. H.G.
1.00 100.0 At2g45130 819120 SPX3 (SPX DOMAIN GENE 3) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO S.X. H.G.
0.96 97.3 At5g20790 832202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.87 93.5 At1g19200 838503 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF S.X. H.G.
0.83 91.4 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV S.X. H.G.
0.79 89.1 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. S.X. H.G.
0.75 86.9 At5g20150 832137 SPX1 (SPX DOMAIN GENE 1) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
329.3 100.0 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
272.3 100.0 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
219.1 100.0 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
197.0 100.0 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
182.0 100.0 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
172.3 100.0 E-ATMX-31-raw-cel-1516947916
161.1 99.9 E-MEXP-1797-raw-cel-1669768039
156.4 99.9 E-MEXP-1797-raw-cel-1669768012
145.5 99.9 E-ATMX-31-raw-cel-1516947899
144.8 99.9 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 9e-104 377 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF C.G. S.X.
0.01 4e-1 36 At5g51200 835195 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPFO C.G. S.X.
0.01 4e-1 36 At3g57880 824957 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOF C.G. S.X.
0.01 4e-1 36 At2g41720 818771 EMB2654 (EMBRYO DEFECTIVE 2654) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBA C.G. S.X.
0.01 4e-1 36 At1g79350 844273 EMB1135 (embryo defective 1135) F:protein binding, DNA binding, zinc ion binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:chloroplast;MBPFOVA C.G. S.X.
0.02 4e-1 36 At1g46840 841118 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P C.G. S.X.
0.01 2e+0 34 At5g24030 832468 SLAH3 (SLAC1 HOMOLOGUE 3) Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane. C.G. S.X.
0.01 2e+0 34 At5g63110 836431 HDA6 (HISTONE DEACETYLASE 6) RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 3e-27 123 Glycine max GmaAffx.55864.1.S1_at BE346443 - - 2e-17 At1g73010 phosphatase C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig4512_s_at Contig4512 - - 2e-2 At2g22080 unknown protein C.G. S.X.
0.04 5e-5 50 Oryza sativa Os01g0720400 AK061237.1 - HAD-superfamily subfamily IB hydrolase,hypothetical 1 protein 2e-6 At1g73010 phosphatase C.G. S.X.
0.29 7e-16 85 Populus trichocarpa Ptp.6052.1.S1_s_at BI122423 hypothetical protein - 6e-16 At1g17710 phosphatase C.G. S.X.
0.07 3e-5 50 Triticum aestivum TaAffx.84901.1.S1_at CA627384 - - 1e-6 At1g73010 phosphatase C.G. S.X.
0.03 8e-3 40 Vitis vinifera 1613562_at CF210939 hypothetical protein LOC100247400 - 3e-2 At1g73010 phosphatase C.G. S.X.
0.07 1e-5 50 Zea mays Zm.13595.1.A1_at AY107750.1 phosphatase phospho1 - 2e-6 At1g73010 phosphatase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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