Gene omics information

Query gene ID At1g17700
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1912.7At1g17700838346PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOFS.X.H.G.
0.3643.6At3g12610820441DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.S.X.H.G.
0.3338.1At3g07010819886pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOS.X.H.G.
0.2930.3At1g64640842772plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PS.X.H.G.
0.2217.5At1g52190841649proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMFOS.X.H.G.
0.092.8At3g23050821879IAA7 (INDOLE-3-ACETIC ACID 7)Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
73.199.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
70.099.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
59.999.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
49.199.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
47.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.027e-238At3g56860824853UBP1 interacting protein 2a (UBA2a)encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.C.G.S.X.
0.033e-136At2g34940818059vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBFC.G.S.X.
0.021e+034At5g08540830754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;POC.G.S.X.
0.011e+034At5g65160836639tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPAC.G.S.X.
0.031e+034At2g38360818416PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFOC.G.S.X.
0.011e+034At1g55040841947zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-550Glycine maxGma.1245.1.S1_atAW349683--3e-5At1g17700PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)C.G.S.X.
0.035e-134Hordeum vulgareContig4544_s_atContig4544--9e-1At1g18835MIF3 (MINI ZINC FINGER)C.G.S.X.
0.061e-448Oryza sativaOs05g02003009633.m00975--7e-5At1g17700PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)C.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.154338.1.S1_atAJ779532--1e-6At1g21245wall-associated kinase-relatedC.G.S.X.
0.047e-238Triticum aestivumTaAffx.121125.1.S1_atCD882407--6e-2At1g17700PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)C.G.S.X.
0.055e-340Vitis vinifera1620710_atCK138155.1--2e-2At1g17700PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)C.G.S.X.
0.037e+030Zea maysZm.5655.2.A1_a_atAY107995.1hypothetical protein LOC100272896-4e-9At2g14910unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0016192The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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