CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g17540

Gene name kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.93 96.4 At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.53 68.6 At3g21570 821711 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.44 57.2 At2g43230 818924 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.40 50.8 At5g42490 834256 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA S.X. H.G.
0.37 45.0 At1g61860 842483 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.36 43.6 At2g28180 817364 ATCHX8 member of Putative Na+/H+ antiporter family S.X. H.G.
0.31 33.8 At3g18810 821414 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVA S.X. H.G.
0.31 33.8 At4g04980 825839 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
217.7 100.0 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
186.3 100.0 E-MEXP-1138-raw-cel-1432772682
170.2 100.0 E-MEXP-1138-raw-cel-1432772522
158.9 99.9 E-MEXP-1138-raw-cel-1432772554
155.8 99.9 E-MEXP-1138-raw-cel-1432773162
154.9 99.9 E-MEXP-1138-raw-cel-1432772650
148.5 99.9 E-MEXP-1138-raw-cel-1432772586
145.0 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
144.0 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
141.5 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 3e-177 623 At1g72760 843608 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 5e-9 63 At5g57035 835807 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ ubiquitin-protein ligase F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.08 2e-8 61 At5g12000 831073 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.10 5e-6 54 At5g26150 832684 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.04 7e-5 50 At4g31230 829250 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 3e-4 48 At1g78940 844233 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.04 3e-4 48 At1g16760 838247 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 4e-3 44 At2g24370 816973 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 4e-3 44 At1g06840 837196 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-3 46 Glycine max Gma.13090.1.S1_at CD391033 - - 2e-3 At5g26150 protein kinase family protein C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig22348_at Contig22348 - - 1e+1 At5g52250 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.04 2e-3 46 Oryza sativa Os02g0218400 AK068947.1 - Protein kinase domain containing protein 1e-3 At5g35380 protein kinase family protein C.G. S.X.
0.07 3e-5 52 Populus trichocarpa PtpAffx.214040.1.S1_at pmrna27340 hypothetical protein - 8e-23 At5g12000 kinase C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.11869.1.S1_at BJ317525 - - 4e-3 At1g49730 protein kinase family protein C.G. S.X.
0.05 9e-5 48 Vitis vinifera 1619378_at AY427199.1 - - 4e-7 At5g26150 protein kinase family protein C.G. S.X.
0.01 5e-1 36 Zea mays Zm.13207.1.A1_at CF007300 - - 3e-5 At5g59700 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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