Gene omics information

Query gene ID At1g17380
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7788.0At1g17380838310JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;PS.X.H.G.
0.5773.8At2g06050815160OPR3 (OPDA-REDUCTASE 3)Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.S.X.H.G.
0.5773.8At3g51450824308strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFS.X.H.G.
0.4050.8At1g20510838639OPCL1 (OPC-8:0 COA LIGASE1)F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAVS.X.H.G.
0.3338.1At4g31800829308WRKY18Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.S.X.H.G.
0.146.8At1g28370839733ERF11 (ERF DOMAIN PROTEIN 11)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
93.699.9GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
80.899.9GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.303e-1789At1g72450843577JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.C.G.S.X.
0.032e-344At1g74950843834TIFY10BF:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;PC.G.S.X.
0.023e-240At5g27690832831heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:unknown;PMOFBVC.G.S.X.
0.011e-138At5g65200836643PUB38 (PLANT U-BOX 38)Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.C.G.S.X.
0.031e-138At5g49700835033DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMBFC.G.S.X.
0.021e-138At5g58380835951SIP1 (SOS3-INTERACTING PROTEIN 1)Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase.C.G.S.X.
0.021e-138At3g45260823664zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-138Glycine maxGmaAffx.76722.1.S1_atBI972754--1e-2At4g17670senescence-associated protein-relatedC.G.S.X.
0.031e-240Hordeum vulgareHV_CEa0009K11r2_atHV_CEa0009K11r2--3e+0At4g23010UDP-galactose transporter-relatedC.G.S.X.
0.028e-136Oryza sativaOsAffx.18062.1.S1_x_at---0C.G.S.X.
0.036e-136Populus trichocarpaPtpAffx.95149.1.A1_atCV258004hypothetical protein-2e-2At5g27247unknown proteinC.G.S.X.
0.051e-138Triticum aestivumTa.24085.1.S1_x_atK02069.1alpha-type gliadin-6e+0At4g01595ATP binding / MAP kinase/ protein kinaseC.G.S.X.
0.035e-134Vitis vinifera1609285_atCF414528UPF0497 membrane protein 16-1e+0At5g54980integral membrane family proteinC.G.S.X.
0.033e+032Zea maysZm.7336.1.A1_atAF371263.1hypothetical protein LOC100279133 /// 50kD gamma zein-2e-3At1g30460CPSF30C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009753A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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