Gene omics information

Query gene ID At1g17290
Gene name AlaAT1 (ALANINE AMINOTRANSFERAS)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5873.8At1g17290838301AlaAT1 (ALANINE AMINOTRANSFERAS)Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxiaS.X.H.G.
0.6579.6At1g19110838494inter-alpha-trypsin inhibitor heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFAS.X.H.G.
0.6478.9At1g15880838158GOS11 (golgi snare 11)Golgi SNARE 11 protein (GOS11)S.X.H.G.
0.6378.1At5g06560830544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.6378.1At4g01960828190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6378.1At4g35790829733ATPLDDELTAEncodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.S.X.H.G.
0.6277.3At5g22000832260RHF2A (RING-H2 GROUP F2A)encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.S.X.H.G.
0.5974.7At1g06890837199transporter-relatedF:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBAS.X.H.G.
0.5873.8At1g28960839773ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)F:hydrolase activity, CoA pyrophosphatase activity (sent to SF);P:biological_process unknown;C:mitochondrion;BOMFPAS.X.H.G.
0.5773.8At1g33250840219fringe-related proteinF:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.499.6E-ATMX-35-raw-cel-1574334880
21.299.6E-ATMX-35-raw-cel-1574334848
19.999.6E-ATMX-35-raw-cel-1574334864
18.599.5E-MEXP-285-raw-cel-440782791
17.599.5GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.199.5E-MEXP-807-raw-cel-1173272948
16.099.5E-MEXP-285-raw-cel-440782725
15.299.4E-MEXP-1138-raw-cel-1432772970
14.599.4GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
14.499.4E-MEXP-1138-raw-cel-1432773098
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7801293At1g72330843565ALAAT2 (ALANINE AMINOTRANSFERASE 2)Encodes for alanine aminotransferase ALAAT2.C.G.S.X.
0.071e-1895At1g17300838302unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e-138At4g31490829276coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane;MOFPC.G.S.X.
0.012e-138At4g31480829275coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFPC.G.S.X.
0.018e-136At4g01320828209ATSTE24CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.C.G.S.X.
0.018e-136At3g21480821702-F:molecular_function unknown;P:biological_process unknown;C:intracellular;MOPBFAC.G.S.X.
0.018e-136At3g06483819826PDK (PYRUVATE DEHYDROGENASE KINASE)Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1α subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily.C.G.S.X.
0.018e-136At3g14650820693CYP72A11putative cytochrome P450C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.542e-57224Glycine maxGma.7690.2.S1_s_atBE803165alanine aminotransferase 1-2e-81At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)C.G.S.X.
0.151e-25117Hordeum vulgareContig9175_atContig9175--2e-26At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)C.G.S.X.
0.347e-1273Oryza sativaOs10g0390500AK102488.1-Alanine aminotransferase1e-34At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)C.G.S.X.
0.514e-62240Populus trichocarpaPtpAffx.217053.1.S1_atpmrna32177hypothetical protein-3e-105At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)C.G.S.X.
0.304e-1893Triticum aestivumTa.28349.1.S1_atBJ243053--5e-18At1g17290AlaAT1 (ALANINE AMINOTRANSFERAS)C.G.S.X.
0.095e-1891Vitis vinifera1620568_atBQ799876--4e-15At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)C.G.S.X.
0.352e-30133Zea maysZm.2321.1.A1_atAW330957hypothetical protein LOC100273503-2e-23At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
XGO:0001666A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
XGO:0019481The chemical reactions and pathways resulting in the breakdown of L-alanine by transamination.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00009Link to KaPPA-View 4Leucine, valine, isoleucine and alanine biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00250Link to KEGG PATHWAYAlanine, aspartate and glutamate metabolism
00710Link to KEGG PATHWAYCarbon fixation in photosynthetic organisms
01064Link to KEGG PATHWAYBiosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01100Link to KEGG PATHWAYMetabolic pathways
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