CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g17230

Gene name ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g17230 838294 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.26 24.4 At4g35240 829677 unknown protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBV S.X. H.G.
0.26 24.4 At5g56250 835724 HAP8 (HAPLESS 8) F:unknown;P:unknown;C:chloroplast;MPOFB S.X. H.G.
0.21 15.8 At1g60670 842361 - F:unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.21 15.8 At3g07930 819984 HhH-GPD base excision DNA repair family protein F:unknown;P:base-excision repair;C:unknown;MPO S.X. H.G.
0.20 14.4 At5g43920 834414 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:cellular_component unknown;MFOBPA S.X. H.G.
0.19 12.7 At4g35140 829666 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:unknown;MBFOPA S.X. H.G.
0.19 12.7 At3g13225 820517 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.17 10.2 At1g22870 838892 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.17 10.2 At1g73950 843732 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:vacuole;MPOVF S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
186.4 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
144.3 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
137.3 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
118.0 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.3 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
107.5 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
103.8 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
101.6 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
99.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
98.6 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-19 97 At2g33170 817878 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.07 1e-10 69 At5g63930 836514 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 1e-7 59 At3g26940 822312 CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1) Receptor-like cytoplasmic kinase, RLCKVII subfamily C.G. S.X.
0.01 4e-7 57 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 4e-4 48 At4g08850 826456 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA C.G. S.X.
0.01 4e-4 48 At2g31880 817746 leucine-rich repeat transmembrane protein kinase, putative Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs. C.G. S.X.
0.01 2e-3 46 At5g48740 834932 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 2e-3 46 At4g20270 827774 BAM3 (BARELY ANY MERISTEM 3) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. C.G. S.X.
0.01 2e-3 46 At3g13380 820538 BRL3 (BRI1-LIKE 3) Similar to BRI, brassinosteroid receptor protein. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-5 52 Glycine max GmaAffx.75380.1.S1_at AI988078 - - 4e-6 At1g17230 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.02 3e-3 44 Hordeum vulgare Contig8354_at Contig8354 - - 1e-36 At2g30740 serine/threonine protein kinase, putative C.G. S.X.
0.10 6e-5 52 Oryza sativa Os07g0152200 9635.m00512 - Receptor-like protein kinase 3e-5 At1g17230 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.15 3e-27 125 Populus trichocarpa PtpAffx.210071.1.S1_at pmrna19838 hypothetical protein - 3e-27 At1g17230 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.04 2e-6 56 Triticum aestivum Ta.4434.2.S1_at BJ260626 - - 2e-7 At5g63930 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 1e-1 38 Vitis vinifera 1612735_at CB976938 hypothetical protein LOC100267773 - 3e-2 At3g24540 protein kinase family protein C.G. S.X.
0.01 5e-5 50 Zea mays Zm.2367.1.S1_at AW497505 Pti1 protein - 5e-30 At3g62220 serine/threonine protein kinase, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage