Gene omics information

Query gene ID At1g17145
Gene name protein binding / zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2420.7At1g17145838285protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPOMS.X.H.G.
0.4050.8At1g34260840326phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity;P:phosphatidylinositol metabolic process;C:cellular_component unknown;MOFPAS.X.H.G.
0.3643.6At3g17770821045dihydroxyacetone kinase family proteinF:glycerone kinase activity, ATP binding;P:glycerol metabolic process;C:cellular_component unknown;BOFMPAS.X.H.G.
0.3133.8At2g26800817221hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putativeF:hydroxymethylglutaryl-CoA lyase activity, catalytic activity;P:leucine metabolic process, metabolic process;C:mitochondrion;BOAFMPS.X.H.G.
0.2726.2At3g20770821625EIN3 (ETHYLENE-INSENSITIVE3)ethylene-insensitive3S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
371.0100.0E-ATMX-35-raw-cel-1574334832
323.9100.0E-ATMX-35-raw-cel-1574334816
125.199.9E-ATMX-35-raw-cel-1574334800
116.599.9GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
106.199.9GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
89.899.9GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
62.599.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
60.199.8GSM184914Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
46.999.8GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
42.199.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.387e-71268At1g78420844178protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;FPMOC.G.S.X.
0.028e-342At5g10790830946UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22)Encodes a ubiquitin-specific protease.C.G.S.X.
0.023e-240At4g08320826386tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OMBPFAC.G.S.X.
0.023e-240At2g02300814761AtPP2-B5 (Phloem protein 2-B5)F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;PC.G.S.X.
0.023e-240At1g74870843826protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOBC.G.S.X.
0.035e-136At5g55620835656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.015e-136At5g55540835648TRN1 (TORNADO 1)Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.C.G.S.X.
0.025e-136At4g29400829061unknown proteinF:unknown;P:biological_process unknown;C:unknown;OBPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.342e-25117Glycine maxGma.8275.2.S1_atBM526914--1e-25At1g17145protein binding / zinc ion bindingC.G.S.X.
0.022e-136Hordeum vulgarerbaak32b03_s_atrbaak32b03--4e-13At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)C.G.S.X.
0.071e-656Oryza sativaOs02g0244100AK065504.1-Zn-finger, RING domain containing protein1e-6At1g17145protein binding / zinc ion bindingC.G.S.X.
0.273e-34147Populus trichocarpaPtpAffx.209855.1.S1_atpmrna19426hypothetical protein-1e-35At1g78420protein binding / zinc ion bindingC.G.S.X.
0.035e-136Triticum aestivumTa.19204.2.S1_x_atCA717149--3e-2At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeC.G.S.X.
0.026e-134Vitis vinifera1621467_atCA817542hypothetical protein LOC100242259-3e-1At2g30420ETC2C.G.S.X.
0.023e+032Zea maysZmAffx.95.1.A1_atAI665406hypothetical protein LOC100273017-8e-1At1g43160RAP2.6 (related to AP2 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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