CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g16950

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At1g16950 838266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.86 93.1 At1g25340 839118 MYB116 (myb domain protein 116) putative transcription factor (MYB116) S.X. H.G.
0.75 86.9 At5g23970 832462 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
0.57 73.8 At1g68320 843161 MYB62 (myb domain protein 62) putative transcription factor: R2R3-MYB transcription family S.X. H.G.
0.40 50.8 At2g28690 817418 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
878.4 100.0 GSM62704 arf6 arf8 flowers_stage 13-14 GSE2848 Auxin Response Factor mediated flower gene expression
751.4 100.0 E-MEXP-1474-raw-cel-1593932865
737.7 100.0 E-MEXP-1474-raw-cel-1593932801
417.2 100.0 E-MEXP-1474-raw-cel-1593932833
316.5 100.0 E-MEXP-1474-raw-cel-1593932929
249.7 100.0 E-MEXP-1474-raw-cel-1593932897
247.7 100.0 E-MEXP-1474-raw-cel-1593932545
189.0 100.0 GSM62703 arf6 arf8 flowers_stage 11-12 GSE2848 Auxin Response Factor mediated flower gene expression
170.1 100.0 E-MEXP-1474-raw-cel-1593932769
126.0 99.9 GSM62693 arf6 arf8 flowers_stage 1-14_IAA GSE2847 Auxin induction in wild type and arf6 arf8 flowers
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-1 34 At5g58120 835924 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.03 5e-1 34 At3g53580 824526 diaminopimelate epimerase family protein F:diaminopimelate epimerase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;OBAPM C.G. S.X.
0.02 5e-1 34 At3g11402 820312 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.04 2e+0 32 At5g38080 833788 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 32 At5g37130 833685 binding F:binding;P:biological_process unknown;C:apoplast;OBAMFP C.G. S.X.
0.01 2e+0 32 At5g39710 833967 EMB2745 (EMBRYO DEFECTIVE 2745) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBA C.G. S.X.
0.01 2e+0 32 At4g10320 826624 isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative F:isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:response to cadmium ion, tRNA aminoacylation for protein translation;C:cytosol;OBAMFP C.G. S.X.
0.04 2e+0 32 At4g21030 827850 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO C.G. S.X.
0.03 2e+0 32 At4g16490 827347 binding F:binding;P:biological_process unknown;C:unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e+0 32 Glycine max GmaAffx.71865.1.S1_at BE583549 - - 3e+0 At5g18060 auxin-responsive protein, putative C.G. S.X.
0.04 4e+0 30 Hordeum vulgare HI08G11r_at HI08G11r - - 4e+0 At3g22090 unknown protein C.G. S.X.
0.05 1e+0 34 Oryza sativa OsAffx.4270.1.S1_at - - - 0 C.G. S.X.
0.05 7e-1 34 Populus trichocarpa PtpAffx.138634.1.A1_at DN489770 - - 9e-1 At1g16950 unknown protein C.G. S.X.
0.05 6e-1 34 Triticum aestivum TaAffx.5700.1.S1_at CA702056 - - 7e-1 At1g16950 unknown protein C.G. S.X.
0.04 6e-1 32 Vitis vinifera 1616806_at CF605749 hypothetical protein LOC100259004 - 6e-2 At2g01340 unknown protein C.G. S.X.
0.03 9e-1 32 Zea mays Zm.12384.1.A1_at AY111304.1 - - 5e-4 At3g23340 ckl10 (Casein Kinase I-like 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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