Gene omics information

Query gene ID At1g16850
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g16850838256unknown proteinF:molecular_function unknown;P:response to salt stress;C:endomembrane system;PS.X.H.G.
0.5773.8At1g09350837457AtGolS3 (Arabidopsis thaliana galactinol synthase 3)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOS.X.H.G.
0.5773.8At1g51090841532heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVFS.X.H.G.
0.4457.2At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.S.X.H.G.
0.3133.8At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
266.7100.0E-MEXP-1345-raw-cel-1559561259
184.5100.0E-MEXP-1345-raw-cel-1559561229
176.4100.0GSM131279AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
174.6100.0GSM269823T6 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
173.3100.0E-MEXP-1345-raw-cel-1559561289
117.399.9GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
112.899.9GSM269825T8 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
112.399.9GSM133407Bramke_A1-warre-WTCGSE5711Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
105.299.9E-MEXP-1344-raw-cel-1559561653
103.499.9GSM131282AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.042e-136At5g01650831707macrophage migration inhibitory factor family protein / MIF family proteinF:molecular_function unknown;P:inflammatory response, response to other organism;C:chloroplast;MOBPFC.G.S.X.
0.012e-136At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVC.G.S.X.
0.032e-136At3g10220820184tubulin folding cofactor BF:molecular_function unknown;P:tubulin complex assembly;C:nucleus, phragmoplast, cytoplasm;MFOPC.G.S.X.
0.032e-136At2g46310819239CRF5 (CYTOKININ RESPONSE FACTOR 5)CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.C.G.S.X.
0.029e-134At5g58730835987pfkB-type carbohydrate kinase family proteinF:kinase activity;P:biological_process unknown;C:unknown;BOPAFMVC.G.S.X.
0.039e-134At5g27980832868seed maturation family proteinF:molecular_function unknown;P:multicellular organismal development;C:cellular_component unknown;PBMOC.G.S.X.
0.019e-134At4g224855008156-Encodes a Protease inhibitor/seed storage/LTP family proteinC.G.S.X.
0.049e-134At4g148193770106unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.029e-134At4g27970828910SLAH2 (SLAC1 HOMOLOGUE 2)Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e+032Glycine maxPsAffx.psMA002xC20f_s_atPsAffx.psMA002xC20f--1e-1At1g63980D111/G-patch domain-containing proteinC.G.S.X.
0.047e-340Hordeum vulgareContig26342_atContig26342--5e-16At1g48410AGO1 (ARGONAUTE 1)C.G.S.X.
0.033e-240Oryza sativaOs03g0329700CB670789-Protein kinase domain containing protein3e-2At5g49770leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.045e+032Populus trichocarpaPtpAffx.7582.2.A1_atDN487290--4e-18At3g2483060S ribosomal protein L13A (RPL13aB)C.G.S.X.
0.044e+032Triticum aestivumTaAffx.30900.1.S1_atCA621239--4e+0At1g16850unknown proteinC.G.S.X.
0.034e+030Vitis vinifera1622852_atCB982747--4e+0At5g06790unknown proteinC.G.S.X.
0.032e+032Zea maysZm.8927.1.S1_atBQ578253--5e-3At2g41905unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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