CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g16380

Gene name ATCHX1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g16380 838208 ATCHX1 member of Putative Na+/H+ antiporter family S.X. H.G.
0.86 93.1 At1g67540 843075 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At3g23270 821906 regulator of chromosome condensation (RCC1) family protein F:chromatin binding, phosphoinositide binding, Ran GTPase binding;P:signal transduction;C:cellular_component unknown;MOPBFAV S.X. H.G.
0.67 81.6 At5g19610 832081 sec7 domain-containing protein F:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB S.X. H.G.
0.60 75.7 At1g68090 843137 ANN5 Encodes a calcium-binding protein annexin (AnnAt5). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
272.6 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
271.0 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
247.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
245.7 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
237.1 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
235.4 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
229.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
223.4 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
222.2 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
215.1 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 7e-70 266 At1g79400 844278 ATCHX2 (CATION/H+ EXCHANGER 2) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 1e-6 56 At5g41610 834163 ATCHX18 member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 5e+0 34 At5g03070 831675 IMPA-9 (IMPORTIN ALPHA ISOFORM 9) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.01 5e+0 34 At5g65950 836725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.01 5e+0 34 At5g06830 830574 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPABF C.G. S.X.
0.01 5e+0 34 At5g11380 831009 DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3) Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 40 Glycine max GmaAffx.62723.1.A1_at BG316241 - - 4e-15 At4g30270 MERI5B (meristem-5) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HVSMEf0019H05r2_at HVSMEf0019H05r2 - - 6e+0 At5g47050 protein binding / zinc ion binding C.G. S.X.
0.01 4e-2 42 Oryza sativa Os05g0120100 AK060437.1 - - 1e-17 At2g37340 RSZ33 C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.201420.1.S1_at pmrna2805 AP2/ERF domain-containing transcription factor - 5e-7 At5g19790 RAP2.11 (related to AP2 11) C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.7677.1.S1_at CA653698 - - 7e-1 At5g02000 unknown protein C.G. S.X.
0.01 6e+0 32 Vitis vinifera 1619841_at CD800826 hypothetical protein LOC100256746 - 3e-23 At1g15960 NRAMP6 C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6732.4.S1_at AY105066.1 hypothetical protein LOC100193321 - 1e-2 At4g10110 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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