CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g16360

Gene name LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At1g16360 838205 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein F:unknown;P:biological_process unknown;C:membrane;MOFP S.X. H.G.
0.76 87.4 At3g46750 823828 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.69 82.9 At2g19330 816450 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:chloroplast;MPBOFAV S.X. H.G.
0.61 76.7 At5g14670 831319 ATARFA1B (ADP-ribosylation factor A1B) A member of ARF GTPase family. Arabidopsis has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor DcARF1 (GI:965483) (Daucus carota), other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. S.X. H.G.
0.59 74.7 At2g33670 817932 MLO5 (MILDEW RESISTANCE LOCUS O 5) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.55 70.6 At5g61700 836292 ATATH16 member of ATH subfamily S.X. H.G.
0.51 66.3 At4g29340 829055 PRF4 (PROFILIN 4) Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining. S.X. H.G.
0.47 61.2 At5g17480 831614 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) F:calcium ion binding;P:biological_process unknown;C:cytoplasm;MPFOB S.X. H.G.
0.44 57.2 At3g02440 821154 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFB S.X. H.G.
0.44 57.2 At4g33390 829476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
508.3 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
357.7 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
130.7 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
107.9 99.9 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
98.0 99.9 E-MEXP-285-raw-cel-440782725
92.6 99.9 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
90.1 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
84.3 99.9 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
80.6 99.9 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
75.7 99.9 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 2e-89 329 At1g79450 844283 ALIS5 (ALA-Interacting Subunit 5) F:unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, plasma membrane, membrane;MOFP C.G. S.X.
0.18 9e-9 61 At1g54320 841873 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein F:unknown;P:biological_process unknown;C:chloroplast, membrane;MOFP C.G. S.X.
0.11 2e-6 54 At5g46150 834657 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOFP C.G. S.X.
0.25 8e-6 52 At3g12740 820456 ALIS1 (ALA-INTERACTING SUBUNIT 1) Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3. C.G. S.X.
0.02 1e-1 38 At1g18970 838478 GLP4 (GERMIN-LIKE PROTEIN 4) Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 8e-13 75 Glycine max GmaAffx.34491.1.S1_at BE820865 - - 9e-13 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
0.12 2e-8 59 Hordeum vulgare Contig10416_at Contig10416 - - 1e-11 At1g54320 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
0.20 2e-8 61 Oryza sativa Os02g0173800 AK069063.1 - Eukaryotic protein of unknown function DUF284family protein 2e-8 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
0.10 4e-2 40 Populus trichocarpa PtpAffx.24886.1.A1_at CV271846 hypothetical protein - 3e-11 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.09 6e-7 56 Triticum aestivum Ta.6848.1.S1_at CD862536 - - 6e-14 At1g54320 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
0.08 7e-10 63 Vitis vinifera 1607867_at CF209466 hypothetical protein LOC100267404 - 3e-8 At1g54320 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
0.17 2e-10 65 Zea mays Zm.8459.1.A1_at BM078128 cell division control protein 50 - 1e-9 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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