CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g16180

Gene name TMS membrane family protein / tumour differentially expressed (TDE) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At1g16180 838187 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO S.X. H.G.
0.61 76.7 At4g15470 827218 - F:unknown;P:unknown;C:unknown;BOMPFV S.X. H.G.
0.53 68.6 At1g17080 838278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.47 61.2 At3g04090 819564 SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A) Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER. S.X. H.G.
0.46 59.8 At3g51520 824315 diacylglycerol acyltransferase family F:diacylglycerol O-acyltransferase activity, transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;MBFOP S.X. H.G.
0.45 58.3 At4g28770 828998 - F:molecular_function unknown;P:unknown;C:plasma membrane, vacuole, membrane;PO S.X. H.G.
0.43 55.3 At1g03900 839378 ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4) member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain. S.X. H.G.
0.27 26.2 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.8 98.7 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
6.5 98.6 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
6.2 98.6 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
5.8 98.4 E-MEXP-1784-raw-cel-1661573053
5.6 98.4 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
5.4 98.3 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
5.4 98.3 GSM142729 CH001_ATH1_A008-Hampt-c1b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
5.3 98.3 GSM75515 Col-0 6h MOCK replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
5.2 98.2 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
5.2 98.2 GSM157323 Hammond_3-16_Control-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 1e-8 61 At3g06170 819791 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:unknown;P:unknown;C:endomembrane system, membrane;MFPOB C.G. S.X.
0.02 2e-1 38 At4g18090 827534 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OP C.G. S.X.
0.01 2e-1 38 At1g62740 842572 stress-inducible protein, putative F:binding;P:response to stress;C:cytosol, nucleus, plasma membrane;OBMPFAV C.G. S.X.
0.02 6e-1 36 At5g01520 831747 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF C.G. S.X.
0.02 6e-1 36 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. C.G. S.X.
0.01 6e-1 36 At5g12400 831115 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-12 75 Glycine max GmaAffx.66328.1.S1_at AW277770 - - 3e-13 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.27 6e-24 111 Hordeum vulgare Contig3707_s_at Contig3707 - - 1e-23 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.20 2e-15 85 Oryza sativa Os02g0792900 AK068367.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.53 1e-73 278 Populus trichocarpa PtpAffx.1257.1.S1_a_at CF228330 hypothetical protein - 3e-65 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.17 2e-22 107 Triticum aestivum Ta.906.1.S1_at CK195658 - - 3e-22 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.61 9e-127 452 Vitis vinifera 1611216_at CB912018 hypothetical protein LOC100262087 - 4e-126 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.22 9e-23 107 Zea mays Zm.747.1.A1_at CF627612 hypothetical protein LOC100191588 - 3e-22 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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