Gene omics information

Query gene ID At1g16070
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7083.5At1g16070838177AtTLP8 (TUBBY LIKE PROTEIN 8)Member of TLP familyS.X.H.G.
0.4457.2At3g58770825046unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.3235.7At5g37010833671unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVAS.X.H.G.
0.3133.8At1g21880838790LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOFS.X.H.G.
0.2726.2At4g01730826911zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:unknown;MOFPS.X.H.G.
0.2319.3At3g02210821245COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PS.X.H.G.
0.1710.2At3g55660824732ROPGEF6Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.S.X.H.G.
0.146.8At5g48820834940ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
110.299.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
70.799.9GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
66.399.8GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.099.8GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
49.599.8GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
41.799.8GSM242955Steroid day 1 (day1D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-242At3g03360821272F-box family proteinF:unknown;P:biological_process unknown;C:chloroplast;POFC.G.S.X.
0.016e-136At4g31010829228RNA bindingF:RNA binding;P:biological_process unknown;C:mitochondrion;PC.G.S.X.
0.026e-136At3g16880820943F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.012e+034At5g18680831986AtTLP11 (TUBBY LIKE PROTEIN 11)Member of TLP familyC.G.S.X.
0.012e+034At5g01630831710BRCA2B (BRCA2-LIKE B)Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.C.G.S.X.
0.012e+034At5g50180835083protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVAC.G.S.X.
0.012e+034At5g39480833944F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.028e-136Glycine maxHgAffx.13457.2.S1_atCB826321--1e+0At1g17700PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)C.G.S.X.
0.055e-961Hordeum vulgareContig21321_atContig21321--6e-9At1g16070AtTLP8 (TUBBY LIKE PROTEIN 8)C.G.S.X.
0.053e-448Oryza sativaOs02g01794009630.m00789--2e-4At1g16070AtTLP8 (TUBBY LIKE PROTEIN 8)C.G.S.X.
0.166e-1479Populus trichocarpaPtpAffx.200078.1.S1_atpmrna140hypothetical protein-4e-14At1g16070AtTLP8 (TUBBY LIKE PROTEIN 8)C.G.S.X.
0.022e+034Triticum aestivumTa.15794.1.S1_atCA486961--1e-3At1g02300cathepsin B-like cysteine protease, putativeC.G.S.X.
0.023e+032Vitis vinifera1617415_atBQ793878--4e-37At3g26720glycosyl hydrolase family 38 proteinC.G.S.X.
0.023e-136Zea maysZm.17672.1.A1_atCK371019hypothetical protein LOC100276136-9e-2At5g07600oleosin / glycine-rich proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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