CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g16000

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.43 55.3 At4g31985 829329 60S ribosomal protein L39 (RPL39C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP S.X. H.G.
0.42 53.9 At5g56670 835768 40S ribosomal protein S30 (RPS30C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAV S.X. H.G.
0.41 52.4 At2g25210 817059 60S ribosomal protein L39 (RPL39A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP S.X. H.G.
0.40 50.8 At4g29390 829060 40S ribosomal protein S30 (RPS30B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV S.X. H.G.
0.38 46.7 At1g27435 839634 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.36 43.6 At2g43640 818966 signal recognition particle 14 kDa family protein / SRP14 family protein F:7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding;P:negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFPO S.X. H.G.
0.36 43.6 At2g19730 816492 60S ribosomal protein L28 (RPL28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO S.X. H.G.
0.35 41.6 At1g16740 838245 ribosomal protein L20 family protein F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM S.X. H.G.
0.34 39.8 At3g09500 820107 60S ribosomal protein L35 (RPL35A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOBAFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.0 99.9 GSM226535 L5SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
87.4 99.9 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
75.2 99.9 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
55.7 99.8 GSM226534 L4SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.7 99.8 GSM226533 L3SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.3 99.8 GSM252667 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep1 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
48.2 99.8 GSM252668 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
38.7 99.8 GSM226545 Slice3JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
36.7 99.7 GSM252679 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep1 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
25.7 99.7 GSM252677 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 2e-31 135 At1g80890 844429 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 5e-1 34 At5g62960 836416 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.01 5e-1 34 At4g09160 826497 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:chloroplast;MOFBPVA C.G. S.X.
0.05 5e-1 34 At2g41200 818719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-1 34 At1g03750 839417 SWI2 (SWITCH 2) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:membrane;MBOFPVA C.G. S.X.
0.06 5e-1 34 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P C.G. S.X.
0.04 5e-1 34 At1g18760 838458 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.03 5e-1 34 At1g03475 839489 LIN2 (LESION INITIATION 2) Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-1 34 Glycine max GmaAffx.65606.1.S1_at CA801234 - - 8e-1 At1g16000 unknown protein C.G. S.X.
0.05 2e-1 34 Hordeum vulgare Contig24156_at Contig24156 - - 3e+0 At1g63522 - C.G. S.X.
0.16 1e-12 73 Oryza sativa Os08g0272000 AK111355.1 - Conserved hypothetical protein 1e-12 At1g16000 unknown protein C.G. S.X.
0.09 2e-4 46 Populus trichocarpa PtpAffx.218609.1.S1_at pmrna34286 hypothetical protein - 2e-4 At1g80890 unknown protein C.G. S.X.
0.05 2e+0 32 Triticum aestivum TaAffx.79083.1.S1_at CA722919 - - 8e-1 At4g36040 DNAJ heat shock N-terminal domain-containing protein (J11) C.G. S.X.
0.05 4e-2 36 Vitis vinifera 1622695_at CF414053 hypothetical protein LOC100267469 - 2e-2 At3g63230 unknown protein C.G. S.X.
0.16 2e-13 73 Zea mays Zm.965.1.S1_at CA828949 hypothetical protein LOC100277149 - 3e-4 At1g80890 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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