CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g15920

Gene name CCR4-NOT transcription complex protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g15920 838162 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF S.X. H.G.
0.40 50.8 At1g53320 841766 AtTLP7 (TUBBY LIKE PROTEIN 7) Member of TLP family S.X. H.G.
0.29 30.3 At2g34770 818042 FAH1 (FATTY ACID HYDROXYLASE 1) encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death. S.X. H.G.
0.25 22.6 At1g04985 839352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.25 22.6 At4g01960 828190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.0 99.8 E-ATMX-35-raw-cel-1574334880
41.8 99.8 E-MEXP-285-raw-cel-440782725
36.1 99.7 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
34.1 99.7 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
32.8 99.7 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
32.7 99.7 E-ATMX-35-raw-cel-1574334816
32.6 99.7 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
32.1 99.7 E-ATMX-35-raw-cel-1574334832
31.4 99.7 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
31.2 99.7 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.40 1e-13 77 At2g32070 817767 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOF C.G. S.X.
0.27 2e-12 73 At1g80780 844417 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF C.G. S.X.
0.06 7e-3 42 At5g10960 830963 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF C.G. S.X.
0.02 4e-1 36 At5g56960 835798 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:response to chitin, regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.02 4e-1 36 At4g18790 827613 NRAMP5 member of Nramp2 family C.G. S.X.
0.02 4e-1 36 At1g78210 844157 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFA C.G. S.X.
0.02 2e+0 34 At5g48040 834855 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-2 42 Glycine max Gma.13047.2.S1_a_at BI700802 - - 3e-4 At1g80780 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.04 3e-3 42 Hordeum vulgare Contig10269_at Contig10269 - - 7e-13 At1g80780 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.03 1e-2 42 Oryza sativa Os02g0796300 AK073025.1 - - 7e-12 At1g80780 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.13 4e-5 50 Populus trichocarpa PtpAffx.89578.1.S1_at CX658022 hypothetical protein - 1e-16 At5g10960 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.05 3e-2 40 Triticum aestivum Ta.6106.2.S1_a_at CA596166 - - 1e-15 At1g80780 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.04 3e-2 38 Vitis vinifera 1618372_at CF208521 hypothetical protein LOC100248407 - 4e-14 At2g32070 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.07 7e-1 34 Zea mays Zm.1902.1.A1_at BM347375 hypothetical protein LOC100193739 - 1e-1 At1g80780 CCR4-NOT transcription complex protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009451 The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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