Gene omics information

Query gene ID At1g15920
Gene name CCR4-NOT transcription complex protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At1g15920838162CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOFS.X.H.G.
0.4050.8At1g53320841766AtTLP7 (TUBBY LIKE PROTEIN 7)Member of TLP familyS.X.H.G.
0.2930.3At2g34770818042FAH1 (FATTY ACID HYDROXYLASE 1)encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.S.X.H.G.
0.2522.6At1g04985839352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2522.6At4g01960828190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
43.099.8E-ATMX-35-raw-cel-1574334880
41.899.8E-MEXP-285-raw-cel-440782725
36.199.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
34.199.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
32.899.7GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
32.799.7E-ATMX-35-raw-cel-1574334816
32.699.7GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
32.199.7E-ATMX-35-raw-cel-1574334832
31.499.7GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
31.299.7GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.401e-1377At2g32070817767CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOFC.G.S.X.
0.272e-1273At1g80780844417CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOFC.G.S.X.
0.067e-342At5g10960830963CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOFC.G.S.X.
0.024e-136At5g56960835798basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:response to chitin, regulation of transcription;C:nucleus;PMFOC.G.S.X.
0.024e-136At4g18790827613NRAMP5member of Nramp2 familyC.G.S.X.
0.024e-136At1g78210844157hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFAC.G.S.X.
0.022e+034At5g48040834855ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-242Glycine maxGma.13047.2.S1_a_atBI700802--3e-4At1g80780CCR4-NOT transcription complex protein, putativeC.G.S.X.
0.043e-342Hordeum vulgareContig10269_atContig10269--7e-13At1g80780CCR4-NOT transcription complex protein, putativeC.G.S.X.
0.031e-242Oryza sativaOs02g0796300AK073025.1--7e-12At1g80780CCR4-NOT transcription complex protein, putativeC.G.S.X.
0.134e-550Populus trichocarpaPtpAffx.89578.1.S1_atCX658022hypothetical protein-1e-16At5g10960CCR4-NOT transcription complex protein, putativeC.G.S.X.
0.053e-240Triticum aestivumTa.6106.2.S1_a_atCA596166--1e-15At1g80780CCR4-NOT transcription complex protein, putativeC.G.S.X.
0.043e-238Vitis vinifera1618372_atCF208521hypothetical protein LOC100248407-4e-14At2g32070CCR4-NOT transcription complex protein, putativeC.G.S.X.
0.077e-134Zea maysZm.1902.1.A1_atBM347375hypothetical protein LOC100193739-1e-1At1g80780CCR4-NOT transcription complex protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009451The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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