CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g15880

Gene name GOS11 (golgi snare 11)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g15880 838158 GOS11 (golgi snare 11) Golgi SNARE 11 protein (GOS11) S.X. H.G.
0.79 89.1 At5g54310 835519 AGD5 (ARF-GAP domain 5) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. S.X. H.G.
0.75 86.9 At1g33250 840219 fringe-related protein F:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFO S.X. H.G.
0.73 85.5 At5g06560 830544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.71 84.2 At5g22000 832260 RHF2A (RING-H2 GROUP F2A) encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. S.X. H.G.
0.70 83.5 At4g00720 828023 ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA S.X. H.G.
0.67 81.6 At5g23670 832432 LCB2 Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum. S.X. H.G.
0.67 81.6 At5g32440 833203 - F:unknown;P:unknown;C:chloroplast;OPMFB S.X. H.G.
0.64 78.9 At1g71410 843482 protein kinase family protein F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVA S.X. H.G.
0.61 76.7 At1g28960 839773 ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) F:hydrolase activity, CoA pyrophosphatase activity (sent to SF);P:biological_process unknown;C:mitochondrion;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.5 99.7 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
27.7 99.7 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
27.0 99.7 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
23.8 99.6 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
23.5 99.6 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
22.0 99.6 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
21.0 99.6 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
21.0 99.6 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
20.1 99.6 E-MEXP-1138-raw-cel-1432773066
19.3 99.6 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e+0 34 At5g18960 832014 FRS12 (FAR1-related sequence 12) F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFM C.G. S.X.
0.02 1e+0 34 At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. C.G. S.X.
0.01 1e+0 34 At3g55100 824676 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV C.G. S.X.
0.02 1e+0 34 At1g63170 842621 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.03 5e+0 32 At5g55620 835656 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e+0 32 At5g23700 832435 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 5e+0 32 At5g42140 834219 zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein F:chromatin binding, phosphoinositide binding, zinc ion binding, Ran GTPase binding;P:signal transduction;C:unknown;MOPBFAV C.G. S.X.
0.02 5e+0 32 At5g57640 835869 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFVB C.G. S.X.
0.02 5e+0 32 At4g19000 827636 IWS1 C-terminus family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 7e-37 155 Glycine max Gma.1413.1.S1_a_at AW734487 - - 8e-37 At1g15880 GOS11 (golgi snare 11) C.G. S.X.
0.06 6e-1 34 Hordeum vulgare Contig7723_at Contig7723 - - 2e+0 At5g55280 FTSZ1-1 C.G. S.X.
0.07 3e-3 44 Oryza sativa Os08g0440000 AK102539.1 - Vesicle transport v-SNARE family protein 2e-3 At1g15880 GOS11 (golgi snare 11) C.G. S.X.
0.39 1e-16 87 Populus trichocarpa PtpAffx.73007.1.A1_at CV246599 - - 2e-16 At1g15880 GOS11 (golgi snare 11) C.G. S.X.
0.05 5e+0 32 Triticum aestivum TaAffx.47461.1.S1_at CA640099 - - 1e-3 At2g45200 GOS12 (GOLGI SNARE 12) C.G. S.X.
0.22 8e-24 109 Vitis vinifera 1617825_s_at CF205420.1 - - 3e-23 At1g15880 GOS11 (golgi snare 11) C.G. S.X.
0.08 3e-9 61 Zea mays Zm.18090.1.S1_at CK986006 golgi SNARE 12 protein - 1e-8 At1g15880 GOS11 (golgi snare 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006944 The joining of two lipid bilayers to form a single membrane.
S GO:0006891 The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04130 SNARE interactions in vesicular transport
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