Gene omics information

Query gene ID At1g15550
Gene name GA3OX1 (GIBBERELLIN 3-OXIDASE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g15550838125GA3OX1 (GIBBERELLIN 3-OXIDASE 1)Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).S.X.H.G.
0.2217.5At3g05190819683aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMS.X.H.G.
0.1811.4At4g11140826715CRF1 (CYTOKININ RESPONSE FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).S.X.H.G.
0.124.9At2g20180816538PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression.S.X.H.G.
0.114.1At5g66920836826sks17 (SKU5 Similar 17)F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOAS.X.H.G.
0.103.4At4g16210827314ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPAS.X.H.G.
0.040.9At1g29980839877-F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PBS.X.H.G.
0.030.6At5g25900832659GA3 (GA REQUIRING 3)Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.S.X.H.G.
0.010.2At3g08030819994unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cell wall;PBS.X.H.G.
0.000.0At5g38530833841tryptophan synthase-relatedF:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process;C:unknown;BOAFPMS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
191.7100.0GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seeds
184.8100.0GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seeds
177.9100.0GSM133315RIKEN-LI3AGSE5701AtGenExpress: Basic hormone treatment of seeds
161.299.9GSM133314RIKEN-LI2BGSE5701AtGenExpress: Basic hormone treatment of seeds
153.999.9GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seeds
128.399.9E-MEXP-849-raw-cel-1181980998
123.399.9GSM133316RIKEN-LI3BGSE5701AtGenExpress: Basic hormone treatment of seeds
121.899.9E-MEXP-849-raw-cel-1181980990
115.699.9E-MEXP-849-raw-cel-1181980982
103.599.9GSM133312RIKEN-LI1BGSE5701AtGenExpress: Basic hormone treatment of seeds
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.424e-45182At1g80340844374GA3OX2 (GIBBERELLIN 3-OXIDASE 2)Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.C.G.S.X.
0.122e-25117At1g80330844373GA3OX4 (GIBBERELLIN 3-OXIDASE 4)Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.C.G.S.X.
0.069e-342At4g21690828256GA3OX3 (GIBBERELLIN 3-OXIDASE 3)F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMC.G.S.X.
0.021e-138At4g32770829413VTE1 (VITAMIN E DEFICIENT 1)Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading.C.G.S.X.
0.012e+034At5g44070834430CAD1 (CADMIUM SENSITIVE 1)Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.C.G.S.X.
0.022e+034At5g63130836433octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e+034At5g52800835357DNA primaseF:DNA primase activity;P:DNA replication;C:cellular_component unknown;MOPVC.G.S.X.
0.022e+034At5g58110835923ATPase activator/ chaperone bindingF:ATPase activator activity, chaperone binding;P:biological_process unknown;C:cytoplasm;MPOC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.051e-552Glycine maxGmaAffx.79193.1.S1_atBI471175--5e-6At1g15550GA3OX1 (GIBBERELLIN 3-OXIDASE 1)C.G.S.X.
0.021e+034Hordeum vulgareHT07C05r_s_atHT07C05r--2e+0At1g54140TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)C.G.S.X.
0.021e+036Oryza sativaOs01g02603009629.m01542--1e-1At5g05230ubiquitin-protein ligaseC.G.S.X.
0.022e-138Populus trichocarpaPtpAffx.158726.1.S1_atBU877899hypothetical protein-3e-14At1g67340zinc finger (MYND type) family protein / F-box family proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.24590.1.S1_atCA716574--8e-1At1g15550GA3OX1 (GIBBERELLIN 3-OXIDASE 1)C.G.S.X.
0.026e-134Vitis vinifera1609261_s_atCB982050hypothetical protein LOC100264228-4e+0At2g26020PDF1.2b (plant defensin 1.2b)C.G.S.X.
0.024e+032Zea maysZm.6085.3.S1_a_atAI668392--9e+0At5g53820unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009739A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
XGO:0010114A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
XGO:0009639A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
XGO:0009686The chemical reactions and pathways resulting in the formation of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.
SGO:0009740A series of molecular signals mediated by the detection of gibberellic acid.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00053Link to KaPPA-View 4Gibberellin (GA) biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00904Link to KEGG PATHWAYDiterpenoid biosynthesis
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage