CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g15510

Gene name pentatricopeptide (PPR) repeat-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At1g15510 838121 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POFMB S.X. H.G.
0.57 73.8 At4g33760 829518 tRNA synthetase class II (D, K and N) family protein F:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane, cytoplasm;BOMFAP S.X. H.G.
0.50 65.3 At1g69380 843270 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;FBOPM S.X. H.G.
0.50 65.3 At5g65490 836674 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA S.X. H.G.
0.40 50.8 At4g04190 825734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At3g14330 820653 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
200.0 100.0 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
163.0 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
106.5 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
75.2 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
70.6 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
66.1 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
57.5 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
56.2 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.5 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-3 44 At1g19720 838561 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:nucleus, chloroplast, cytoplasm;POMFBA C.G. S.X.
0.01 8e-2 40 At3g20730 821621 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:endomembrane system;POMFB C.G. S.X.
0.01 8e-2 40 At3g61170 825289 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMFB C.G. S.X.
0.01 3e-1 38 At5g50390 835107 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMF C.G. S.X.
0.01 3e-1 38 At3g51370 824300 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:plasma membrane;PMOFBV C.G. S.X.
0.01 3e-1 38 At3g26540 822262 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.01 3e-1 38 At3g57430 824910 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POFMB C.G. S.X.
0.02 3e-1 38 At1g34160 840315 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Glycine max GmaAffx.59424.1.S1_at BI425699 MYB transcription factor MYB171 - 9e-1 At3g61630 CRF6 (CYTOKININ RESPONSE FACTOR 6) C.G. S.X.
0.02 1e-2 42 Hordeum vulgare Contig13552_at Contig13552 - - 7e-3 At1g15510 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 3e-3 46 Oryza sativa Os05g0574800 9633.m04693 - TPR-like domain containing protein 9e-2 At3g12770 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.26 6e-16 87 Populus trichocarpa PtpAffx.202919.1.S1_at pmrna5778 hypothetical protein - 4e-16 At1g15510 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 1e-3 46 Triticum aestivum TaAffx.107143.1.S1_at CA705382 - - 3e-2 At3g23330 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1611356_at CB348579 hypothetical protein LOC100242644 - 4e+0 At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.02 9e-3 42 Zea mays Zm.12727.1.S1_at CD997307 - - 2e-6 At2g15690 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009451 The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
X GO:0009658 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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