CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g15200

Gene name protein-protein interaction regulator family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.88 94.0 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. S.X. H.G.
0.82 90.9 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA S.X. H.G.
0.80 89.8 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.78 88.6 At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.74 86.1 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.71 84.2 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA S.X. H.G.
0.61 76.7 At3g19650 821502 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.59 74.7 At5g25060 832577 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA S.X. H.G.
0.57 73.8 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
257.0 100.0 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
223.9 100.0 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
178.6 100.0 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
166.4 100.0 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
165.6 100.0 GSM284388 Arabidopsis GMPE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
158.3 99.9 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
155.5 99.9 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
151.8 99.9 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
127.1 99.9 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
118.0 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-3 44 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.02 1e-2 42 At3g09150 820069 HY2 (ELONGATED HYPOCOTYL 2) Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. C.G. S.X.
0.02 4e-2 40 At3g57000 824867 nucleolar essential protein-related F:molecular_function unknown;P:unknown;C:nucleus;MOFAPBV C.G. S.X.
0.02 4e-2 40 At3g28007 822424 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB C.G. S.X.
0.01 4e-2 40 At3g01840 820047 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOFBVA C.G. S.X.
0.01 4e-2 40 At2g01280 814656 MEE65 (maternal effect embryo arrest 65) F:RNA polymerase II transcription factor activity, cation:chloride symporter activity;P:embryonic development ending in seed dormancy;C:transcription factor complex, nucleus;OMFABPV C.G. S.X.
0.02 4e-2 40 At2g26940 817235 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 2e-5 52 Glycine max GmaAffx.86326.1.S1_s_at BG044608 - - 6e-6 At1g15200 protein-protein interaction regulator family protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.02 8e-2 40 Oryza sativa Os02g0606200 AB001885.1 - - 4e-2 At2g20613 unknown protein C.G. S.X.
0.23 4e-18 93 Populus trichocarpa Ptp.2330.1.S1_at CV241221 hypothetical protein - 2e-18 At1g15200 protein-protein interaction regulator family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.92024.1.A1_at BJ285568 - - 4e+0 At3g49305 - C.G. S.X.
0.12 8e-10 63 Vitis vinifera 1621258_at CB971625 hypothetical protein LOC100245237 - 1e-9 At1g15200 protein-protein interaction regulator family protein C.G. S.X.
0.02 7e-2 38 Zea mays Zm.9671.1.A1_at BM335188 - - 6e+0 At4g15075 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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