Gene omics information

Query gene ID At1g15080
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g15080838072LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.S.X.H.G.
1.00100.0At2g21195816656unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PS.X.H.G.
0.9797.6At1g07970837312unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOBS.X.H.G.
0.9797.6At2g38880818472NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.S.X.H.G.
0.9797.6At3g62330825406zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.9797.6At4g01570828133pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBAS.X.H.G.
0.9797.6At4g19400827681actin bindingF:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;POS.X.H.G.
0.9797.6At4g24700828572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9797.6At5g18570831975GTP1/OBG family proteinF:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPVS.X.H.G.
0.9396.4At3g06790819864plastid developmental protein DAG, putativeF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1425.1100.0GSM133757Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.599.7GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.699.7GSM133770Lindsey_1-22_torpedo-apical_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.177e-961At3g02600821299LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)Encodes phosphatidic acid phosphatase. Expressed during germination.C.G.S.X.
0.095e-446At2g01180814646ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.C.G.S.X.
0.024e-136At4g23120828411bromo-adjacent homology (BAH) domain-containing proteinF:DNA binding;P:unknown;C:cellular_component unknown;PMOC.G.S.X.
0.024e-136At4g02440828008EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.056e-446Glycine maxGmaAffx.30344.1.S1_atAW349341--5e-6At2g01180ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)C.G.S.X.
0.104e-1891Hordeum vulgareContig8594_atContig8594--2e-17At1g15080LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)C.G.S.X.
0.174e-654Oryza sativaOs09g0308900AK121946.1-Phosphoesterase, PA-phosphatase related familyprotein3e-6At1g15080LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)C.G.S.X.
0.256e-756Populus trichocarpaPtpAffx.202610.1.S1_atpmrna5222hypothetical protein-2e-25At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)C.G.S.X.
0.102e-963Triticum aestivumTa.3559.1.S1_atBE213357--3e-9At1g15080LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)C.G.S.X.
0.045e-444Vitis vinifera1621834_atBQ794561hypothetical protein LOC100254175-2e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)C.G.S.X.
0.113e-961Zea maysZm.8204.1.A1_atBM073273hypothetical protein LOC100193193-5e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009738A series of molecular signals mediated by the detection of abscisic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00048Link to KaPPA-View 4Glycerolipid biosynthesis (prokaryotic pathway)
00423Link to KaPPA-View 4Glycerolipid biosynthesis (eukaryotic pathway)
00424Link to KaPPA-View 4Phospholipid biosynthesis(eukaryotic pathway)
00427Link to KaPPA-View 4Glycerolipid biosynthesis in mitochondria
00428Link to KaPPA-View 4Triacylglycerol biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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