CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g15080

Gene name LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. S.X. H.G.
1.00 100.0 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
0.97 97.6 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. S.X. H.G.
0.97 97.6 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.97 97.6 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA S.X. H.G.
0.97 97.6 At4g19400 827681 actin binding F:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;PO S.X. H.G.
0.97 97.6 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV S.X. H.G.
0.93 96.4 At3g06790 819864 plastid developmental protein DAG, putative F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1425.1 100.0 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
37.9 99.8 E-MEXP-1797-raw-cel-1669767949
33.6 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.4 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.8 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.5 99.7 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.2 99.7 E-MEXP-1797-raw-cel-1669767958
28.5 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.6 99.7 GSM133770 Lindsey_1-22_torpedo-apical_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.6 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 7e-9 61 At3g02600 821299 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) Encodes phosphatidic acid phosphatase. Expressed during germination. C.G. S.X.
0.09 5e-4 46 At2g01180 814646 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves. C.G. S.X.
0.02 4e-1 36 At4g23120 828411 bromo-adjacent homology (BAH) domain-containing protein F:DNA binding;P:unknown;C:cellular_component unknown;PMO C.G. S.X.
0.02 4e-1 36 At4g02440 828008 EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-4 46 Glycine max GmaAffx.30344.1.S1_at AW349341 - - 5e-6 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.10 4e-18 91 Hordeum vulgare Contig8594_at Contig8594 - - 2e-17 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.17 4e-6 54 Oryza sativa Os09g0308900 AK121946.1 - Phosphoesterase, PA-phosphatase related familyprotein 3e-6 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.25 6e-7 56 Populus trichocarpa PtpAffx.202610.1.S1_at pmrna5222 hypothetical protein - 2e-25 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.10 2e-9 63 Triticum aestivum Ta.3559.1.S1_at BE213357 - - 3e-9 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.04 5e-4 44 Vitis vinifera 1621834_at BQ794561 hypothetical protein LOC100254175 - 2e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.11 3e-9 61 Zea mays Zm.8204.1.A1_at BM073273 hypothetical protein LOC100193193 - 5e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009738 A series of molecular signals mediated by the detection of abscisic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00048 Glycerolipid biosynthesis (prokaryotic pathway)
00423 Glycerolipid biosynthesis (eukaryotic pathway)
00424 Phospholipid biosynthesis(eukaryotic pathway)
00427 Glycerolipid biosynthesis in mitochondria
00428 Triacylglycerol biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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