CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g15020

Gene name thioredoxin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At1g15020 838067 thioredoxin family protein Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. S.X. H.G.
0.46 59.8 At5g66030 836733 ATGRIP Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization. S.X. H.G.
0.43 55.3 At3g62240 825397 zinc finger (C2H2 type) family protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPV S.X. H.G.
0.40 50.8 At2g35330 818100 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAV S.X. H.G.
0.40 50.8 At3g27530 822375 GC6 (golgin candidate 6) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein. S.X. H.G.
0.39 48.4 At5g43130 834330 TAF4 (TBP-ASSOCIATED FACTOR 4) F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFBPVA S.X. H.G.
0.35 41.6 At3g47610 823915 transcription regulator/ zinc ion binding F:transcription regulator activity, zinc ion binding;P:regulation of transcription;C:nucleus;MFOP S.X. H.G.
0.30 32.1 At1g61690 842466 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:unknown;MOFBPAV S.X. H.G.
0.26 24.4 At2g17030 816206 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.5 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.3 99.7 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
21.5 99.6 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
18.4 99.5 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.9 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.6 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.1 99.5 GSM284388 Arabidopsis GMPE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
15.8 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.4 99.4 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.3 99.4 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 1e-141 504 At2g01270 814654 AtQSOX2 (quiescin-sulfhydryl oxidase 2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. C.G. S.X.
0.01 1e-2 42 At4g34450 829596 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPB C.G. S.X.
0.02 1e-2 42 At2g25690 817110 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At3g60130 825183 BGLU16 (BETA GLUCOSIDASE 16) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:unknown;BOPMFA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-12 75 Glycine max GmaAffx.70158.1.S1_at AI437590 - - 1e-19 At2g01270 AtQSOX2 (quiescin-sulfhydryl oxidase 2) C.G. S.X.
0.09 4e-10 65 Hordeum vulgare Contig7791_at Contig7791 - - 9e-23 At2g01270 AtQSOX2 (quiescin-sulfhydryl oxidase 2) C.G. S.X.
0.07 7e-12 73 Oryza sativa Os05g0552500 AK105695.1 - Erv1/Alr domain containing protein 1e-18 At2g01270 AtQSOX2 (quiescin-sulfhydryl oxidase 2) C.G. S.X.
0.21 2e-26 121 Populus trichocarpa PtpAffx.208044.1.S1_x_at pmrna15968 hypothetical protein - 3e-25 At2g01270 AtQSOX2 (quiescin-sulfhydryl oxidase 2) C.G. S.X.
0.09 1e-8 61 Triticum aestivum Ta.5536.2.S1_a_at CD454155 - - 2e-8 At1g15020 thioredoxin family protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1611373_at CB340113 hypothetical protein LOC100268096 - 4e+0 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.07 9e-5 48 Zea mays Zm.18471.1.A1_at AY106458.1 thiol oxidoreductase - 1e-4 At1g15020 thioredoxin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0043157 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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