CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g14870

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.14 6.8 At1g14870 838052 - F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PMFO S.X. H.G.
0.83 91.4 At2g14610 815949 PR1 (PATHOGENESIS-RELATED GENE 1) PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. S.X. H.G.
0.67 81.6 At1g75040 843842 PR5 (PATHOGENESIS-RELATED GENE 5) Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. S.X. H.G.
0.59 74.7 At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase S.X. H.G.
0.56 73.0 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO S.X. H.G.
0.53 68.6 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV S.X. H.G.
0.53 68.6 At5g55450 835638 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.4 99.5 E-ATMX-34-raw-cel-1563627284
15.4 99.5 GSM184555 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.3 99.4 E-TABM-62-raw-cel-720974181
12.6 99.3 E-TABM-62-raw-cel-720978818
12.2 99.3 E-MEXP-173-raw-cel-357965520
12.0 99.3 E-TABM-62-raw-cel-720982137
12.0 99.3 E-ATMX-34-raw-cel-1563627275
12.0 99.3 E-TABM-126-raw-cel-1242543033
11.9 99.3 E-TABM-62-raw-cel-720980182
11.8 99.3 E-TABM-62-raw-cel-720983627
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 6e-153 539 At5g35525 833517 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.90 1e-141 502 At1g14880 838053 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;PMFO C.G. S.X.
0.07 2e-1 36 At1g68610 843191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.00 9e-1 34 At1g50030 841427 TOR (TARGET OF RAPAMYCIN) Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems. C.G. S.X.
0.05 4e+0 32 At5g16567 6240540 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-1 36 Glycine max Gma.5793.5.S1_at CD414114 - - 5e-1 At1g14870 - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare EBro08_SQ009_L23_at EBro08_SQ009_L23 - - 1e+0 At1g03650 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.03 1e-4 48 Oryza sativa Os04g0286400 AK062974.1 - Hypothetical protein 2e-4 At1g14870 - C.G. S.X.
0.04 8e-2 38 Populus trichocarpa Ptp.3169.2.S1_a_at CK104417 hypothetical protein - 9e-2 At1g14870 - C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.7413.1.S1_at CA659512 - - 5e-1 At5g57750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1621014_at CF212114 hypothetical protein LOC100258834 - 2e+0 At3g06760 - C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.720.1.S1_at AI739909 - - 2e-1 At1g11572 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage