Gene omics information

Query gene ID At1g14720
Gene name XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g14720838037XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)member of Glycoside Hydrolase Family 16S.X.H.G.
0.2930.3At1g19800838568TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.S.X.H.G.
0.2522.6At3g20320821576TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.S.X.H.G.
0.2522.6At5g26880832746tRNA/rRNA methyltransferase (SpoU) family proteinF:RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOPMS.X.H.G.
0.2014.4At4g31040829231proton extrusion protein-relatedF:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOFS.X.H.G.
0.1710.2At4g33670829509L-galactose dehydrogenase (L-GalDH)Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesisS.X.H.G.
0.030.6At3g07300819918eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
48.299.8GSM245920csn3-1 mutant dark replicate 2GSE9728COP9 signalosome (csn) mutant analysis
41.499.8GSM245919csn3-1 mutant dark replicate 1GSE9728COP9 signalosome (csn) mutant analysis
26.999.7GSM142885CW001_ATH1_A1.4-WestC-kubGSE6178Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
25.899.7GSM245921csn3-1_mutant_dark replicate 1GSE9728COP9 signalosome (csn) mutant analysis
23.999.6GSM245912csn3-1 mutant light replicate 3GSE9728COP9 signalosome (csn) mutant analysis
23.799.6GSM245915csn5 (csn5a-2 csn5b) mutant light replicate 3GSE9728COP9 signalosome (csn) mutant analysis
23.799.6GSM245911csn3-1 mutant light replicate 2GSE9728COP9 signalosome (csn) mutant analysis
23.299.6GSM245910csn3-1 mutant light replicate 1GSE9728COP9 signalosome (csn) mutant analysis
21.899.6GSM270865Arabidopsis cell culture, 4 h_control_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1
21.799.6GSM245913csn5 (csn5a-2 csn5b) mutant light replicate 1GSE9728COP9 signalosome (csn) mutant analysis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.634e-85315At2g01850814716EXGT-A3EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves.C.G.S.X.
0.035e-446At2g18800816395XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBOC.G.S.X.
0.032e-344At4g30290829152XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.C.G.S.X.
0.038e-342At4g30270829150MERI5B (meristem-5)encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.C.G.S.X.
0.035e-136At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)C.G.S.X.
0.025e-136At4g09010826480APX4 (ASCORBATE PEROXIDASE 4)Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.C.G.S.X.
0.015e-136At4g02780828182GA1 (GA REQUIRING 1)Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesisC.G.S.X.
0.015e-136At2g30490817599C4H (CINNAMATE-4-HYDROXYLASE)Encodes a cinnamate-4-hydroxylase.C.G.S.X.
0.012e+034At5g43530834373SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 8 functions;P:unknown;C:chloroplast envelope;MBOFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.143e-963Glycine maxGmaAffx.91339.1.S1_atCF807064--1e-9At1g14720XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)C.G.S.X.
0.024e+032Hordeum vulgareHF14N13r_atHF14N13r--3e-1At5g10350polyadenylate-binding protein family protein / PABP family proteinC.G.S.X.
0.032e-242Oryza sativaOs09g0395600AK122079.1-Glycoside hydrolase, family 16 domain containingprotein1e-2At1g14720XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)C.G.S.X.
0.266e-23109Populus trichocarpaPtpAffx.256.1.S1_atAJ767988hypothetical protein-7e-23At1g14720XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)C.G.S.X.
0.025e-136Triticum aestivumTaAffx.105595.1.S1_atCK208387--6e-4At1g32170XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)C.G.S.X.
0.207e-1993Vitis vinifera1619355_atCF405819hypothetical protein LOC100266368-4e-18At1g14720XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)C.G.S.X.
0.023e+032Zea maysZm.13942.1.A1_atCF637457hypothetical protein LOC100279675-2e-6At4g00585unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0080086The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen.
XGO:0010154The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase
00437Link to KaPPA-View 4Xyloglucan biosynthesis and modification



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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