CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g14130

Gene name 2-oxoglutarate-dependent dioxygenase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g14130 837972 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFM S.X. H.G.
0.23 19.3 At5g08500 830749 transmembrane CLPTM1 family protein F:unknown;P:biological_process unknown;C:unknown;MOFP S.X. H.G.
0.20 14.4 At1g21450 838743 SCL1 (SCARECROW-LIKE 1) Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. S.X. H.G.
0.17 10.2 At1g52080 841637 AR791 unknown function S.X. H.G.
0.17 10.2 At5g12290 831104 DGS1 (DGD1 SUPPRESSOR 1) Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background. S.X. H.G.
0.14 6.8 At1g30400 839920 MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1) glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. S.X. H.G.
0.09 2.8 At3g04670 819625 WRKY39 member of WRKY Transcription Factor; Group II-d S.X. H.G.
0.05 1.1 At2g37570 818333 SLT1 (sodium- and lithium-tolerant 1) encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene. S.X. H.G.
0.04 0.9 At5g12200 831093 dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) F:hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, dihydropyrimidinase activity;P:unknown;C:endomembrane system;OBMAFP S.X. H.G.
0.02 0.4 At2g37150 818291 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
97.4 99.9 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
95.1 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
87.2 99.9 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
85.1 99.9 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
80.3 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
78.7 99.9 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
73.9 99.9 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
72.0 99.9 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
70.3 99.9 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
68.0 99.9 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 2e-173 609 At1g14120 837971 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.03 7e-3 42 At1g02400 839508 GA2OX6 (GIBBERELLIN 2-OXIDASE 6) Encodes a gibberellin 2-oxidase. C.G. S.X.
0.01 1e-1 38 At4g16310 827325 LDL3 (LSD1-LIKE3) F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:unknown;MBFOPA C.G. S.X.
0.01 1e-1 38 At4g31540 829281 ATEXO70G1 (exocyst subunit EXO70 family protein G1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.02 1e-1 38 At2g32960 817858 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, catalytic activity;P:dephosphorylation;C:cellular_component unknown;FPOB C.G. S.X.
0.02 5e-1 36 At5g43290 834347 WRKY49 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.02 5e-1 36 At4g35620 829714 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB C.G. S.X.
0.01 5e-1 36 At3g25150 822106 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MBPFOVA C.G. S.X.
0.02 5e-1 36 At2g39670 818550 radical SAM domain-containing protein F:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-12 73 Glycine max GmaAffx.12248.1.S1_at BF596704 - - 1e-12 At1g14130 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig20570_at Contig20570 - - 5e+0 At3g12600 atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16) C.G. S.X.
0.02 2e-1 38 Oryza sativa Os06g0162800 U78890.1 - MADS box protein 6e-4 At1g24260 SEP3 (SEPALLATA3) C.G. S.X.
0.07 3e-6 54 Populus trichocarpa PtpAffx.201431.1.S1_s_at pmrna2826 2-oxoglutarate-dependent dioxygenase - 2e-6 At1g14130 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.25828.1.A1_at CD453404 - - 5e-1 At3g52550 - C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1611059_at CB920804 - - 8e-22 At3g07900 unknown protein C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.476.1.A1_at AI677574 hypothetical protein LOC100272823 - 1e+1 Atcg00800 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage