Gene omics information

Query gene ID At1g14040
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At1g14040837965-F:unknown;P:unknown;C:integral to membrane;FMPOS.X.H.G.
0.7184.2At5g35580833523ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.5773.8At5g01830831850armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMFBVS.X.H.G.
0.4457.2At3g49690824131MYB84 (MYB DOMAIN PROTEIN 84)"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. "S.X.H.G.
0.3133.8At3g47210823874unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane;PMS.X.H.G.
0.2115.8At3g212408216784CL2 (4-COUMARATE:COA LIGASE 2)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.S.X.H.G.
0.2014.4At5g05790830464myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOS.X.H.G.
0.1912.7At2g16720816173MYB7 (MYB DOMAIN PROTEIN 7)Encodes a member of MYB3R- and R2R3- type MYB- encoding genesS.X.H.G.
0.114.1At4g25390828642protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
142.299.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
140.499.9GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
117.299.9GSM184918Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
103.599.9GSM184898Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
102.699.9GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
90.799.9GSM184917Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
89.599.9GSM184899Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
86.399.9GSM184916Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
83.299.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
73.399.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.682e-175617At2g03240814853-F:unknown;P:unknown;C:integral to membrane;MFPOC.G.S.X.
0.501e-133478At2g03250814854EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane;MFPOBC.G.S.X.
0.527e-64246At2g03260814855EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane;FMPOC.G.S.X.
0.126e-21103At1g35350840424-F:unknown;P:unknown;C:integral to membrane;FMPOBC.G.S.X.
0.134e-1687At1g26730839214EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOBC.G.S.X.
0.072e-1585At3g29060822550-F:unknown;P:unknown;C:integral to membrane;MFPOVBAC.G.S.X.
0.066e-1583At1g69480843280EXS family protein / ERD1/XPR1/SYG1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOBC.G.S.X.
0.119e-1479At4g25350828638SHB1 (SHORT HYPOCOTYL UNDER BLUE1)SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.C.G.S.X.
0.033e-757At3g23430821924PHO1 (phosphate 1)mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.086e-25117Glycine maxGmaAffx.77909.1.S1_atBG882051--9e-11At1g26730EXS family protein / ERD1/XPR1/SYG1 family proteinC.G.S.X.
0.011e-138Hordeum vulgareContig11217_atContig11217--6e-4At3g44750HDA3 (HISTONE DEACETYLASE 3)C.G.S.X.
0.016e-138Oryza sativaOsAffx.30905.4.S1_at---0C.G.S.X.
0.321e-1689Populus trichocarpaPtpAffx.207872.1.S1_atpmrna15627pho1-like protein-9e-17At1g14040-C.G.S.X.
0.021e+036Triticum aestivumTa.1006.1.S1_atCA630632--4e+0At3g23430PHO1 (phosphate 1)C.G.S.X.
0.019e-238Vitis vinifera1619747_atCF372623hypothetical protein LOC100247254-7e-5At2g22080unknown proteinC.G.S.X.
0.015e-136Zea maysZm.1066.2.S1_atBG549692hypothetical protein LOC100279270-4e-1At3g52900unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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