CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13990

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At1g13990 837959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.86 93.1 At3g03470 821250 CYP89A9 member of CYP89A S.X. H.G.
0.57 73.8 At3g44880 823622 ACD1 (ACCELERATED CELL DEATH 1) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. S.X. H.G.
0.57 73.8 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF S.X. H.G.
0.44 57.2 At5g18130 831931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
66.1 99.8 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
63.6 99.8 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
45.2 99.8 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
43.4 99.8 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
43.2 99.8 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
37.5 99.7 GSM128677 Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
36.2 99.7 GSM128675 Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
36.0 99.7 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
35.6 99.7 GSM244448 Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
34.6 99.7 E-MEXP-1443-raw-cel-1581869921
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-2 40 At5g08330 830730 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOB C.G. S.X.
0.02 3e-2 40 At2g02230 814754 AtPP2-B1 (Phloem protein 2-B1) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e-1 38 At5g37790 833757 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 1e-1 38 At5g19090 832028 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.02 1e-1 38 At3g19580 821495 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2) Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. C.G. S.X.
0.02 1e-1 38 At2g35640 818133 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:regulation of transcription;C:unknown;PMFOBV C.G. S.X.
0.03 1e-1 38 At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Glycine max GmaAffx.66307.1.S1_at BM309319 - - 9e-4 At2g02880 mucin-related C.G. S.X.
0.03 5e-2 38 Hordeum vulgare EBro02_SQ006_H19_at EBro02_SQ006_H19 - - 5e-5 At2g35960 NHL12 C.G. S.X.
0.02 5e-2 40 Oryza sativa OsAffx.27508.131.S1_s_at - - - 0 C.G. S.X.
0.07 4e-2 40 Populus trichocarpa Ptp.696.1.A1_at BP936633 hypothetical protein - 2e-2 At1g13990 unknown protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.28070.1.S1_at CA665679 - - 3e-3 At5g08330 TCP family transcription factor, putative C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1613211_at CF369069 - - 6e+0 Atmg01310 - C.G. S.X.
0.03 7e-1 34 Zea mays Zm.16508.3.A1_at AI739900 ribosomal protein L39 - 4e-9 At3g02190 60S ribosomal protein L39 (RPL39B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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